setClass               package:methods               R Documentation

_C_r_e_a_t_e _a _C_l_a_s_s _D_e_f_i_n_i_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     Create  a class definition, specifying the representation (the
     slots) and/or the classes contained in this one (the
     superclasses), plus other optional details.

_U_s_a_g_e:

     setClass(Class, representation, prototype, contains=character(),
              validity, access, where, version, sealed, package)

_A_r_g_u_m_e_n_t_s:

   Class: character string name for the class.

representation: a named list of the slots that the new class should
          have, the names giving the names of the slots and the
          corresponding elements being the character string names of 
          the corresponding classes. Usually a call to the
          'representation' function. 

          Backward compatibility and compatibility with S-Plus allows
          unnamed elements for superclasses, but the recommended style
          is to use the 'contains=' argument instead.

prototype: an object providing the default data for the slots in this
          class.  Usually and preferably the result of a call to
          'prototype'. 

contains: what classes does this class extend?  (These are called
          _superclasses_ in some languages.)  When these classes have
          slots, all their slots will be contained in the new class as
          well. 

   where: the environment in which to store or remove the definition. 
          Defaults to the top-level environment of the calling function
          (the global environment for ordinary computations, and the
          environment or name space of a package in the source code for
          that package). 

validity: if supplied, should be a validity-checking method for objects
          from this class (a function that returns 'TRUE' if its
          argument is a valid object of this class and one or more
          strings describing the failures otherwise).  See
          'validObject' for details.

access, version: access and version, included for compatibility with
          S-Plus, but currently ignored.

  sealed: if 'TRUE', the class definition will be sealed, so that
          another call to 'setClass' will fail on this class name. 

 package: an optional package name for the class.  By default (and
          usually) the name of the package in which the class
          definition is assigned. 

_B_a_s_i_c _U_s_e: _S_l_o_t_s _a_n_d _I_n_h_e_r_i_t_a_n_c_e:

     The two essential arguments, other than the class name are
     'representation' and 'contains', defining the explicit slots and
     the inheritance (superclasses). Together, these arguments define
     all the information in an object from this class; that is, the
     names of all the slots and the classes required for each of them.

     The name of the class determines which methods apply directly to
     objects from this class.  The  inheritance information specifies
     which methods apply indirectly, through inheritance.  See Methods.

     The slots in a class definition will be the union of all the slots
     specified directly by 'representation' and all the slots in all
     the contained classes. There can only be one slot with a given
     name; specifically, the direct and inherited slot names must be
     unique. That does not, however, prevent the same class from being
     inherited via more than one path.

     One kind of element in the 'contains=' argument is special,
     specifying one of the R vector types or one of a few other special
     R types ('matrix' and 'array'). A class can contain at most one of
     these, directly or indirectly. When it does, that contained class
     determines the "data part" of the class, and objects from the new
     class inherit all the built in behavior of the contained type. Two
     direct consequences are:  for any object 'x' from the class,
     'typeof(x)' will be the contained basic type; and a special
     pseudo-slot, '.Data', will be shown with the corresponding class.

     For an object from any class that does _not_ contain such a type,
     'typeof(x)' will be '"S4"' and the class will have no '.Data'
     slot.

_P_r_o_t_o_t_y_p_e_s:

     Defining new classes that inherit from ('extend') other classes is
     a powerful technique, but has to be used carefully and not
     over-used.  Otherwise, you will often get unintended results when
     you start to compute with objects from the new class.

     As shown in the examples below, the simplest and safest form of
     inheritance is to start with an explicit class, with some slots,
     that does not extend anything else.  It only does what we say it
     does.

     Then extensions will add some new slots and new behavior.

     Another variety of extension starts with one of the built-in
     objects, perhaps with the intention of modifying R's standard
     behavior for that class.  In this case, the new class inherits the
     built-in data type as its 'data' part.  See the '"numWithId"'
     example below.

     When such a class definition is printed, the data part shows up as
     a pseudo-slot named '.Data'.

_C_l_a_s_s_e_s _a_n_d _P_a_c_k_a_g_e_s:

     Class definitions normally belong to packages (but can be defined
     in the  global environment as well, by evaluating the expression
     on the command line or in a file sourced from the command line).
     The corresponding package name is part of the class definition;
     that is, part of the 'classRepresentation' object holding that
     definition.  Thus, two classes with the same name can exist in
     different packages, for most purposes.

     When a class name is supplied for a slot or a superclass, a
     corresponding class definition will be found, looking from the
     name space or environment of the current package, assuming the
     call to 'setClass' in question appears directly in the source for
     the package.  That's where it should appear, to avoid ambiguity.

     In particular, if the current package has a name space then the 
     class must be found in the current package itself, in the imports
     defined by that name space, or in the base package.

     When this rule does not identify a class uniquely (because it
     appears in more than one imported package) then the 'packageSlot'
     of the character string name needs to be supplied with the name.
     This should be a rare occurrence.

_N_o_t_e:

     Certain slot names are not allowed in the current implementation,
     as they correspond to attributes which are treated specially. 
     These are 'class', 'comment', 'dim', 'dimnames', 'names',
     'row.names' and 'tsp'.

_R_e_f_e_r_e_n_c_e_s:

     Chambers, John M. (2008) _Software for Data Analysis: Programming
     with R_ Springer.  (For the R version.)

     Chambers, John M. (1998) _Programming with Data_ Springer (For the
     original S4 version.)

_S_e_e _A_l_s_o:

     'Classes' for a general discussion of classes, 'Methods' for an
     analogous discussion of methods, 'makeClassRepresentation'

_E_x_a_m_p_l_e_s:

     ## A simple class with two slots
     setClass("track",
              representation(x="numeric", y="numeric"))
     ## A class extending the previous, adding one more slot
     setClass("trackCurve",
         representation(smooth = "numeric"),
         contains = "track")
     ## A class similar to "trackCurve", but with different structure
     ## allowing matrices for the "y" and "smooth" slots
     setClass("trackMultiCurve",
              representation(x="numeric", y="matrix", smooth="matrix"),
              prototype = list(x=numeric(), y=matrix(0,0,0),
                               smooth= matrix(0,0,0)))
     ##
     ## Suppose we want trackMultiCurve to be like trackCurve when there's
     ## only one column.
     ## First, the wrong way.
     try(setIs("trackMultiCurve", "trackCurve",
         test = function(obj) {ncol(slot(obj, "y")) == 1}))

     ## Why didn't that work?  You can only override the slots "x", "y",
     ## and "smooth" if you provide an explicit coerce function to correct
     ## any inconsistencies:

     setIs("trackMultiCurve", "trackCurve",
       test = function(obj) {ncol(slot(obj, "y")) == 1},
       coerce = function(obj) {
          new("trackCurve",
              x = slot(obj, "x"),
              y = as.numeric(slot(obj,"y")),
              smooth = as.numeric(slot(obj, "smooth")))
       })

     ## A class that extends the built-in data type "numeric"

     setClass("numWithId", representation(id = "character"),
              contains = "numeric")

     new("numWithId", 1:3, id = "An Example")

