# report.rb

Path: | lib/bio/appl/spidey/report.rb
Last Update: | Mon Sep 07 08:20:49 +0000 2009

# bio/appl/spidey/report.rb - SPIDEY result parser

Copyright: | Copyright (C) 2004 GOTO Naohisa <ng@bioruby.org>
License: | The Ruby License

     $Id: report.rb,v 1.10 2007/04/05 23:35:40 trevor Exp $

NCBI Spidey result parser. Currently, output of default (-p 0 option) or -p 1 option are supported.

## Notes

The mRNA sequence is regarded as a query, and the enomic sequence is regarded as a target (subject, hit).

## References

- Wheelan, S.J., et al., Spidey: a tool for mRNA-to-genomic alignments, Genome Research, 11, 1952—1957, 2001. www.genome.org/cgi/content/abstract/11/11/1952
- www.ncbi.nlm.nih.gov/spidey/

### Required files

bio

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