Class | Bio::DDBJ::XML::ClustalW
In: | lib/bio/io/ddbjxml.rb
Parent: | XML

### ClustalW

Multiple seaquece alignment using ClustalW.

- xml.nig.ac.jp/doc/ClustalW.txt

### Examples

      serv = Bio::DDBJ::XML::ClustalW.new

      query = <<END
      > RABSTOUT   rabbit Guinness receptor
      LKMHLMGHLKMGLKMGLKGMHLMHLKHMHLMTYTYTTYRRWPLWMWLPDFGHAS
      ADSCVCAHGFAVCACFAHFDVCFGAVCFHAVCFAHVCFAAAVCFAVCAC
      > MUSNOSE   mouse nose drying factor
      mhkmmhkgmkhmhgmhmhglhmkmhlkmgkhmgkmkytytytryrwtqtqwtwyt
      fdgfdsgafdagfdgfsagdfavdfdvgavfsvfgvdfsvdgvagvfdv
      > HSHEAVEN    human Guinness receptor repeat
      mhkmmhkgmkhmhgmhmhg   lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt
      fdgfdsgafdagfdgfsag   dfavdfdvgavfsvfgv  dfsvdgvagvfdv
      mhkmmhkgmkhmhgmhmhg   lhmkmhlkmgkhmgkmk  ytytytryrwtqtqwtwyt
      fdgfdsgafdagfdgfsag   dfavdfdvgavfsvfgv  dfsvdgvagvfdv
      END

      puts serv.analyzeSimple(query)
      puts serv.analyzeParam(query, '-align -matrix=blosum')

### WSDL Methods

- analyzeSimple(query)
- analyzeParam(query, param)

### References

- xml.nig.ac.jp/doc/ClustalW.txt

### Constants

SERVER_URI | = | BASE_URI + "ClustalW.wsdl"

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