Class | Bio::TRANSFAC::FACTOR
In: | lib/bio/db/transfac.rb
Parent: | TRANSFAC

### Methods

bs cl cn cp dr fa ff ft ho in mx new sc sf sq sy sz

### Public Class methods

new(entry)

[Source]

         # File lib/bio/db/transfac.rb, line 199
    199:     def initialize(entry)
    200:       super(entry)
    201:     end

### Public Instance methods

bs()

BS Bound sites (site accession no.; site ID; quality: N; biological BS species)

[Source]

         # File lib/bio/db/transfac.rb, line 284
    284:     def bs
    285:       field_fetch('BS')
    286:     end

cl()

CL Classification (class accession no.; class identifier; decimal CL classification number.)

[Source]

         # File lib/bio/db/transfac.rb, line 225
    225:     def cl
    226:       field_fetch('CL')
    227:     end

cn()

CN Cell specificity (negative)

[Source]

         # File lib/bio/db/transfac.rb, line 262
    262:     def cn
    263:       field_fetch('CN')
    264:     end

cp()

CP Cell specificity (positive)

[Source]

         # File lib/bio/db/transfac.rb, line 257
    257:     def cp
    258:       field_fetch('CP')
    259:     end

dr()

DR Cross-references to other databases (>=0 per entry)

[Source]

         # File lib/bio/db/transfac.rb, line 214
    214:     def dr
    215:       field_fetch('DR')
    216:     end

fa()

FA Factor name

[Source]

         # File lib/bio/db/transfac.rb, line 204
    204:     def fa
    205:       field_fetch('FA')
    206:     end

ff()

FF Functional features

[Source]

         # File lib/bio/db/transfac.rb, line 267
    267:     def ff
    268:       field_fetch('FF')
    269:     end

ft()

FT Feature table (1st position last position feature)

[Source]

         # File lib/bio/db/transfac.rb, line 247
    247:     def ft
    248:       field_fetch('FT')
    249:     end

ho()

HO Homologs (suggested)

[Source]

         # File lib/bio/db/transfac.rb, line 219
    219:     def ho
    220:       field_fetch('HO')
    221:     end

in()

IN Interacting factors (factor accession no.; factor name; IN biological species.)

[Source]

         # File lib/bio/db/transfac.rb, line 273
    273:     def in
    274:       field_fetch('IN')
    275:     end

mx()

MX Matrix (matrix accession no.; matrix identifier)

[Source]

         # File lib/bio/db/transfac.rb, line 278
    278:     def mx
    279:       field_fetch('MX')
    280:     end

sc()

SC Sequence comment, i. e. source of the protein sequence

[Source]

         # File lib/bio/db/transfac.rb, line 242
    242:     def sc
    243:       field_fetch('SC')
    244:     end

sf()

SF Structural features

[Source]

         # File lib/bio/db/transfac.rb, line 252
    252:     def sf
    253:       field_fetch('SF')
    254:     end

sq()

SQ Sequence

[Source]

         # File lib/bio/db/transfac.rb, line 237
    237:     def sq
    238:       field_fetch('SQ')
    239:     end

sy()

SY Synonyms

[Source]

         # File lib/bio/db/transfac.rb, line 209
    209:     def sy
    210:       field_fetch('SY')
    211:     end

sz()

SZ Size (length (number of amino acids); calculated molecular mass SZ in kDa; experimental molecular mass (or range) in kDa SZ (experimental method) [Ref]

[Source]

         # File lib/bio/db/transfac.rb, line 232
    232:     def sz
    233:       field_fetch('SZ')
    234:     end

[Validate]