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sc::HSOSSCF Class Reference

    The HSOSSCF class is a base for classes implementing a self-consistent

procedure for high-spin open-shell molecules. More...

`#include <hsosscf.h>`

Inheritance diagram for sc::HSOSSCF:
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Collaboration diagram for sc::HSOSSCF:
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## Public Member Functions
| HSOSSCF (StateIn &)
| HSOSSCF (const Ref< KeyVal > &)
| The KeyVal constructor. More...
void | save_data_state (StateOut &)
| Save the base classes (with save_data_state) and the members in the same order that the StateIn CTOR initializes them. More...
void | print (std::ostream &o=ExEnv::out0()) const
| Print information about the object.
double | occupation (int irrep, int vectornum)
| Returns the occupation. More...
double | alpha_occupation (int irrep, int vectornum)
| Returns the alpha occupation. More...
double | beta_occupation (int irrep, int vectornum)
| Returns the beta occupation. More...
int | n_fock_matrices () const
RefSymmSCMatrix | fock (int i)
| Returns closed-shell (i==0) or open-shell (i==1) Fock matrix in AO basis (excluding XC contribution in KS DFT). More...
RefSymmSCMatrix | effective_fock ()
| Returns effective Fock matrix in MO basis (including XC contribution for KS DFT). More...
void | symmetry_changed ()
| Call this if you have changed the molecular symmetry of the molecule contained by this MolecularEnergy. More...
int | spin_polarized ()
| Return 1 if the alpha density is not equal to the beta density.
RefSymmSCMatrix | density ()
| Returns the SO density.
RefSymmSCMatrix | alpha_density ()
| Return alpha electron densities in the SO basis.
RefSymmSCMatrix | beta_density ()
| Return beta electron densities in the SO basis.
Public Member Functions inherited from sc::SCF
| SCF (StateIn &)
| SCF (const Ref< KeyVal > &)
| The KeyVal constructor. More...
void | save_data_state (StateOut &)
| Save the base classes (with save_data_state) and the members in the same order that the StateIn CTOR initializes them. More...
RefSCMatrix | oso_eigenvectors ()
| Returns the orthogonal MO (columns) to orthogonal-SO (rows) transformation matrix. More...
RefDiagSCMatrix | eigenvalues ()
| Returns the MO basis eigenvalues. More...
int | spin_unrestricted ()
| Return 1 if the alpha orbitals are not equal to the beta orbitals.
virtual double | one_body_energy ()
virtual void | two_body_energy (double &ec, double &ex)
void | symmetry_changed ()
| Call this if you have changed the molecular symmetry of the molecule contained by this MolecularEnergy. More...
void | obsolete ()
| Marks all results as being out of date. More...
void | print (std::ostream &o=ExEnv::out0()) const
| Print information about the object.
Public Member Functions inherited from sc::OneBodyWavefunction
| OneBodyWavefunction (StateIn &)
| OneBodyWavefunction (const Ref< KeyVal > &)
| The KeyVal constructor. More...
void | save_data_state (StateOut &)
| Save the base classes (with save_data_state) and the members in the same order that the StateIn CTOR initializes them. More...
int | nelectron ()
| Returns the number of electrons.
void | set_desired_value_accuracy (double eps)
| Overload of Function::set_desired_value_accuracy(). More...
RefSCMatrix | so_to_mo ()
           These members give metrics and basis transformations
using the covariant/contravariant tensor notation. More...
RefSCMatrix | orthog_so_to_mo ()
| Returns the orthogonal-SO to MO transformation matrix.
RefSCMatrix | mo_to_so ()
| Returns the MO to SO transformation matrix.
RefSCMatrix | mo_to_orthog_so ()
| Returns the MO to orthogonal-SO transformation matrix. More...
RefSCMatrix | eigenvectors ()
| Deprecated. More...
double | occupation (int vectornum)
| Returns the occupation. More...
double | alpha_occupation (int vectornum)
| Returns the alpha occupation. More...
double | beta_occupation (int vectornum)
| Returns the beta occupation. More...
virtual RefSCMatrix | oso_alpha_eigenvectors ()
virtual RefSCMatrix | oso_beta_eigenvectors ()
virtual RefSCMatrix | alpha_eigenvectors ()
virtual RefSCMatrix | beta_eigenvectors ()
virtual RefDiagSCMatrix | alpha_eigenvalues ()
virtual RefDiagSCMatrix | beta_eigenvalues ()
virtual RefDiagSCMatrix | projected_eigenvalues (const Ref< OneBodyWavefunction > &, int alp=1)
virtual RefSCMatrix | projected_eigenvectors (const Ref< OneBodyWavefunction > &, int alp=1)
| Projects the density into the current basis set. More...
virtual RefSCMatrix | hcore_guess ()
| Return a guess vector. More...
virtual RefSCMatrix | hcore_guess (RefDiagSCMatrix &val)
| Return a guess vector and the eigenvalues. More...
void | symmetry_changed ()
| Call this if you have changed the molecular symmetry of the molecule contained by this MolecularEnergy. More...
double | orbital (const SCVector3 &r, int iorb)
double | orbital_density (const SCVector3 &r, int iorb, double *orbval=0)
void | print (std::ostream &o=ExEnv::out0()) const
| Print information about the object.
Public Member Functions inherited from sc::Wavefunction
| Wavefunction (StateIn &)
| Wavefunction (const Ref< KeyVal > &)
| The KeyVal constructor. More...
void | save_data_state (StateOut &)
| Save the base classes (with save_data_state) and the members in the same order that the StateIn CTOR initializes them. More...
double | density (const SCVector3 &)
double | density_gradient (const SCVector3 &, double *)
double | natural_orbital (const SCVector3 &r, int iorb)
double | natural_orbital_density (const SCVector3 &r, int orb, double *orbval=0)
double | orbital (const SCVector3 &r, int iorb, const RefSCMatrix &orbs)
double | orbital_density (const SCVector3 &r, int iorb, const RefSCMatrix &orbs, double *orbval=0)
double | charge ()
| Returns the charge.
virtual RefSymmSCMatrix | ao_density ()
| Returns the AO density.
virtual RefSCMatrix | natural_orbitals ()
| Returns the natural orbitals.
virtual RefDiagSCMatrix | natural_density ()
| Returns the natural density (a diagonal matrix).
virtual RefSymmSCMatrix | alpha_ao_density ()
| Return alpha electron densities in the AO basis.
virtual RefSymmSCMatrix | beta_ao_density ()
| Return beta electron densities in the AO basis.
virtual RefSCMatrix | nao (double *atom_charges=0)
| returns the ao to nao transformation matrix
virtual RefSymmSCMatrix | overlap ()
| Returns the SO overlap matrix.
virtual RefSymmSCMatrix | core_hamiltonian ()
| Returns the SO core Hamiltonian.
virtual double | nuclear_repulsion_energy ()
| Returns the nuclear repulsion energy. More...
void | nuclear_repulsion_energy_gradient (double *g)
| Computes the nuclear repulsion gradient. More...
virtual void | nuclear_repulsion_energy_gradient (double **g)
| Computes the nuclear repulsion gradient. More...
RefSCDimension | ao_dimension ()
| Atomic orbital dimension.
RefSCDimension | so_dimension ()
| Symmetry adapted orbital dimension.
RefSCDimension | oso_dimension ()
| Orthogonalized symmetry adapted orbital dimension.
Ref< SCMatrixKit > | basis_matrixkit ()
| Matrix kit for AO, SO, orthogonalized SO, and MO dimensioned matrices.
Ref< Molecule > | molecule () const
| Returns the Molecule.
Ref< GaussianBasisSet > | basis () const
| Returns the basis set.
Ref< GaussianBasisSet > | atom_basis () const
| Returns the basis set describing the nuclear charge distributions.
const double * | atom_basis_coef () const
| Returns the coefficients of the nuclear charge distribution basis functions. More...
Ref< Integral > | integral ()
| Returns the integral evaluator.
void | symmetry_changed ()
| Call this if you have changed the molecular symmetry of the molecule contained by this MolecularEnergy. More...
RefSCMatrix | so_to_orthog_so ()
| Returns a matrix which does the default transform from SO's to orthogonal SO's. More...
RefSCMatrix | so_to_orthog_so_inverse ()
| Returns the inverse of the transformation returned by so_to_orthog_so.
OverlapOrthog::OrthogMethod | orthog_method () const
| Returns the orthogonalization method.
void | set_orthog_method (const OverlapOrthog::OrthogMethod &)
| (Re)Sets the orthogonalization method and makes this obsolete
double | lindep_tol () const
| Returns the tolerance for linear dependencies.
void | set_lindep_tol (double)
| Re(Sets) the tolerance for linear dependencies.
void | obsolete ()
| Marks all results as being out of date. More...
void | print (std::ostream &=ExEnv::out0()) const
| Print information about the object.
Public Member Functions inherited from sc::MolecularEnergy
| MolecularEnergy (const MolecularEnergy &)
| MolecularEnergy (const Ref< KeyVal > &)
| The KeyVal constructor. More...
| MolecularEnergy (StateIn &)
void | set_checkpoint ()
| Set up checkpointing.
void | set_checkpoint_file (const char *)
void | set_checkpoint_freq (int freq)
bool | if_to_checkpoint () const
| Check if need to checkpoint.
const char * | checkpoint_file () const
int | checkpoint_freq () const
MolecularEnergy & | operator= (const MolecularEnergy &)
virtual double | energy ()
| A wrapper around value();.
virtual RefSCDimension | moldim () const
void | guess_hessian (RefSymmSCMatrix &)
| Compute a quick, approximate hessian.
RefSymmSCMatrix | inverse_hessian (RefSymmSCMatrix &)
RefSymmSCMatrix | hessian ()
| If a molecule hessian object is given, it will be used to provide a hessian. More...
int | hessian_implemented () const
void | set_x (const RefSCVector &)
| Set and retrieve the coordinate values.
RefSCVector | get_cartesian_x ()
| Return the cartesian coordinates.
RefSCVector | get_cartesian_gradient ()
| Return the cartesian gradient.
RefSymmSCMatrix | get_cartesian_hessian ()
| Return the cartesian hessian.
Ref< MolecularCoor > | molecularcoor ()
Ref< NonlinearTransform > | change_coordinates ()
| An optimizer can call change coordinates periodically to give the function an opportunity to change its coordinate system. More...
void | print_natom_3 (const RefSCVector &, const char *t=0, std::ostream &o=ExEnv::out0()) const
| Nicely print n x 3 data that are stored in a vector.
void | print_natom_3 (double **, const char *t=0, std::ostream &o=ExEnv::out0()) const
void | print_natom_3 (double *, const char *t=0, std::ostream &o=ExEnv::out0()) const
Public Member Functions inherited from sc::Function
| Function (StateIn &)
| Function (const Function &)
| Function (const Ref< KeyVal > &, double funcacc=DBL_EPSILON, double gradacc=DBL_EPSILON, double hessacc=DBL_EPSILON)
| The keyval constructor reads the following keywords: More...
Function & | operator= (const Function &)
Ref< SCMatrixKit > | matrixkit () const
| Return the SCMatrixKit used to construct vectors and matrices. More...
RefSCDimension | dimension () const
| Return the SCDimension of the problem.
virtual double | value ()
| Return the value of the function.
int | value_needed () const
| Returns nonzero if the current value is not up-to-date.
int | do_value (int)
| If passed a nonzero number, compute the value the next time compute() is called. More...
AccResultdouble & | value_result ()
virtual double | actual_value_accuracy () const
| Return the accuracy with which the value has been computed.
virtual double | desired_value_accuracy () const
| Return the accuracy with which the value is to be computed.
virtual int | value_implemented () const
| Information about the availability of values, gradients, and hessians. More...
virtual int | gradient_implemented () const
RefSCVector | get_x () const
const RefSCVector & | get_x_no_copy () const
virtual RefSCVector | gradient ()
int | gradient_needed () const
int | do_gradient (int)
virtual void | set_desired_gradient_accuracy (double)
virtual double | actual_gradient_accuracy () const
virtual double | desired_gradient_accuracy () const
AccResultRefSCVector & | gradient_result ()
int | hessian_needed () const
int | do_hessian (int)
virtual void | set_desired_hessian_accuracy (double)
virtual double | actual_hessian_accuracy () const
virtual double | desired_hessian_accuracy () const
AccResultRefSymmSCMatrix & | hessian_result ()
Public Member Functions inherited from sc::SavableState
SavableState & | operator= (const SavableState &)
void | save_state (StateOut &)
| Save the state of the object as specified by the StateOut object. More...
void | save_object_state (StateOut &)
| This can be used for saving state when the exact type of the object is known for both the save and the restore. More...
virtual void | save_vbase_state (StateOut &)
| Save the virtual bases for the object. More...
Public Member Functions inherited from sc::DescribedClass
| DescribedClass (const DescribedClass &)
DescribedClass & | operator= (const DescribedClass &)
ClassDesc * | class_desc () const throw ()
| This returns the unique pointer to the ClassDesc corresponding to the given type_info object. More...
const char * | class_name () const
| Return the name of the object's exact type.
int | class_version () const
| Return the version of the class.
Public Member Functions inherited from sc::RefCount
int | lock_ptr () const
| Lock this object.
int | unlock_ptr () const
| Unlock this object.
void | use_locks (bool inVal)
| start and stop using locks on this object
refcount_t | nreference () const
| Return the reference count.
refcount_t | reference ()
| Increment the reference count and return the new count.
refcount_t | dereference ()
| Decrement the reference count and return the new count.
int | managed () const
void | unmanage ()
| Turn off the reference counting mechanism for this object. More...
int | managed () const
| Return 1 if the object is managed. Otherwise return 0.
Public Member Functions inherited from sc::Identity
Identifier | identifier ()
| Return the Identifier for this argument. More...

## Protected Member Functions
void | set_occupations (const RefDiagSCMatrix &evals)
void | init_vector ()
void | done_vector ()
void | reset_density ()
double | new_density ()
double | scf_energy ()
Ref< SCExtrapData > | extrap_data ()
void | init_gradient ()
void | done_gradient ()
RefSymmSCMatrix | lagrangian ()
RefSymmSCMatrix | gradient_density ()
void | init_hessian ()
void | done_hessian ()
void | two_body_deriv_hf (double *grad, double exchange_fraction)
Protected Member Functions inherited from sc::SCF
virtual void | init_threads ()
virtual void | done_threads ()
virtual void | compute ()
| Recompute at least the results that have compute true and are not already computed. More...
virtual double | compute_vector (double &, double enuclear)
virtual Ref< SCExtrapError > | extrap_error ()
virtual void | compute_gradient (const RefSCVector &)
virtual void | compute_hessian (const RefSymmSCMatrix &)
virtual void | savestate_iter (int)
virtual void | savestate_to_file (const std::string &filename)
signed char * | init_pmax (double *)
RefSymmSCMatrix | get_local_data (const RefSymmSCMatrix &, double *&, Access)
virtual void | initial_vector (int needv=1)
void | init_mem (int)
void | so_density (const RefSymmSCMatrix &d, double occ, int alp=1)
int * | read_occ (const Ref< KeyVal > &, const char *name, int nirrep)
virtual void | ao_fock (double accuracy)=0
virtual void | two_body_deriv (double *)=0
Protected Member Functions inherited from sc::OneBodyWavefunction
void | init_sym_info ()
int | form_occupations (int *&newocc, const int *oldocc)
Protected Member Functions inherited from sc::Wavefunction
double | min_orthog_res ()
double | max_orthog_res ()
void | copy_orthog_info (const Ref< Wavefunction > &)
Protected Member Functions inherited from sc::MolecularEnergy
void | failure (const char *)
virtual void | set_energy (double)
| This is just a wrapper around set_value().
virtual void | set_gradient (RefSCVector &)
| These are passed gradients and hessian in cartesian coordinates. More...
virtual void | set_hessian (RefSymmSCMatrix &)
void | x_to_molecule ()
void | molecule_to_x ()
Protected Member Functions inherited from sc::Function
virtual void | set_matrixkit (const Ref< SCMatrixKit > &)
| Set the SCMatrixKit that should be used to construct the requisite vectors and matrices. More...
virtual void | set_dimension (const RefSCDimension &)
RefSCVector & | get_x_reference ()
| Get read/write access to the coordinates for modification.
void | do_change_coordinates (const Ref< NonlinearTransform > &)
| Change the coordinate system and apply the given transform to intermediates matrices and vectors. More...
virtual void | set_value (double)
virtual void | set_actual_value_accuracy (double)
virtual void | set_actual_gradient_accuracy (double)
virtual void | set_actual_hessian_accuracy (double)
Protected Member Functions inherited from sc::SavableState
| SavableState (const SavableState &)
| SavableState (StateIn &)
| Each derived class StateIn CTOR handles the restore corresponding to calling save_object_state, save_vbase_state, and save_data_state listed above. More...

## Protected Attributes
Ref< PointGroup > | most_recent_pg_
int | user_occupations_
int | tndocc_
int | tnsocc_
int | nirrep_
int * | initial_ndocc_
int * | initial_nsocc_
int * | ndocc_
int * | nsocc_
ResultRefSymmSCMatrix | cl_fock_
ResultRefSymmSCMatrix | op_fock_
RefSymmSCMatrix | cl_dens_
RefSymmSCMatrix | cl_dens_diff_
RefSymmSCMatrix | cl_gmat_
RefSymmSCMatrix | op_dens_
RefSymmSCMatrix | op_dens_diff_
RefSymmSCMatrix | op_gmat_
RefSymmSCMatrix | cl_hcore_
Protected Attributes inherited from sc::SCF
int | need_vec_
int | compute_guess_
int | keep_guess_wfn_
Ref< OneBodyWavefunction > | guess_wfn_
int | always_use_guess_wfn_
Ref< SelfConsistentExtrapolation > | extrap_
Ref< AccumH > | accumdih_
Ref< AccumH > | accumddh_
int | maxiter_
int | dens_reset_freq_
int | reset_occ_
int | local_dens_
size_t | storage_
int | print_all_evals_
int | print_occ_evals_
double | level_shift_
Ref< MessageGrp > | scf_grp_
Ref< ThreadGrp > | threadgrp_
int | local_
Ref< TwoBodyInt > * | tbis_
std::string | previous_savestate_file_
RefSCMatrix | oso_scf_vector_
RefSCMatrix | oso_scf_vector_beta_
RefSymmSCMatrix | hcore_
Protected Attributes inherited from sc::OneBodyWavefunction
ResultRefSymmSCMatrix | density_
AccResultRefSCMatrix | oso_eigenvectors_
AccResultRefDiagSCMatrix | eigenvalues_
int | nirrep_
int * | nvecperirrep_
double * | occupations_
double * | alpha_occupations_
double * | beta_occupations_
Protected Attributes inherited from sc::Wavefunction
int | debug_
Protected Attributes inherited from sc::MolecularEnergy
Ref< PointGroup > | initial_pg_
int | print_molecule_when_changed_
Protected Attributes inherited from sc::Function
Ref< SCMatrixKit > | matrixkit_
| Used to construct new matrices.
RefSCVector | x_
| The variables.
RefSCDimension | dim_
| The dimension of x_.
AccResultdouble | value_
| The value of the function at x_.
AccResultRefSCVector | gradient_
| The gradient at x_.
AccResultRefSymmSCMatrix | hessian_
| The hessian at x_.

## Additional Inherited Members
Static Public Member Functions inherited from sc::SavableState
static void | save_state (SavableState *s, StateOut &)
static SavableState * | restore_state (StateIn &si)
| Restores objects saved with save_state. More...
static SavableState * | key_restore_state (StateIn &si, const char *keyword)
| Like restore_state, but keyword is used to override values while restoring. More...
static SavableState * | dir_restore_state (StateIn &si, const char *objectname, const char *keyword=0)
Protected Types inherited from sc::SCF
enum | Access { Read, Write, Accum }

## Detailed Description

    The HSOSSCF class is a base for classes implementing a self-consistent

procedure for high-spin open-shell molecules.

## Constructor & Destructor Documentation

sc::HSOSSCF::HSOSSCF | ( | const Ref< KeyVal > & |  | ) |

The KeyVal constructor.

`total_charge`

  This floating point number gives the total charge, , of the molecule. The default is 0.

`nsocc`

  This integer gives the total number of singly occupied orbitals, . If this is not given, then multiplicity will be read.

`multiplicity`

  This integer gives the multiplicity, , of the molecule. The number of singly occupied orbitals is then . If neither nsocc nor multiplicity is given, then if, in consideration of total_charge, the number of electrons is even, the default is 2. Otherwise, it is 1.

`ndocc`

  This integer gives the total number of doubly occupied orbitals . The default .

`socc`

  This vector of integers gives the total number of singly occupied orbitals of each irreducible representation. By default, the singly occupied orbitals will be distributed according to orbital eigenvalues. If socc is given, then docc must be given and they override nsocc, multiplicity, ndocc, and total_charge.

`docc`

  This vector of integers gives the total number of doubly occupied orbitals of each irreducible representation. By default, the singly occupied orbitals will be distributed according to orbital eigenvalues. If docc is given, then socc must be given and they override nsocc, multiplicity, ndocc, and total_charge.

`maxiter`

  This has the same meaning as in the parent class, SCF; however, the default value is 100.

`level_shift`

  This has the same meaning as in the parent class, SCF; however, the default value is 1.0.

## Member Function Documentation

double sc::HSOSSCF::alpha_occupation | ( | int | irrep,
|  | int | vectornum
| ) |  |
| virtual

Returns the alpha occupation.

The irreducible representation and the vector number within that representation are given as arguments.

Reimplemented from sc::OneBodyWavefunction.

double sc::HSOSSCF::beta_occupation | ( | int | irrep,
|  | int | vectornum
| ) |  |
| virtual

Returns the beta occupation.

The irreducible representation and the vector number within that representation are given as arguments.

Reimplemented from sc::OneBodyWavefunction.

RefSymmSCMatrix sc::HSOSSCF::effective_fock | ( |  | ) |
| virtual

Returns effective Fock matrix in MO basis (including XC contribution for KS DFT).

Implements sc::SCF.

RefSymmSCMatrix sc::HSOSSCF::fock | ( | int | i | ) |
| virtual

Returns closed-shell (i==0) or open-shell (i==1) Fock matrix in AO basis (excluding XC contribution in KS DFT).

Use effective_fock() if you want the full KS Fock matrix.

Implements sc::SCF.

double sc::HSOSSCF::occupation | ( | int | irrep,
|  | int | vectornum
| ) |  |
| virtual

Returns the occupation.

The irreducible representation and the vector number within that representation are given as arguments.

Implements sc::OneBodyWavefunction.

void sc::HSOSSCF::save_data_state | ( | StateOut & |  | ) |
| virtual

Save the base classes (with save_data_state) and the members in the same order that the StateIn CTOR initializes them.

This must be implemented by the derived class if the class has data.

Reimplemented from sc::MolecularEnergy.

void sc::HSOSSCF::symmetry_changed | ( |  | ) |
| virtual

Call this if you have changed the molecular symmetry of the molecule contained by this MolecularEnergy.

Reimplemented from sc::MolecularEnergy.

The documentation for this class was generated from the following file:

- hsosscf.h