## Uses of Interface
org.biojava.bio.alignment.AlignmentElement

Packages that use AlignmentElement
org.biojava.bio.alignment: Classes to generate and describe sequence alignments.

Uses of AlignmentElement in org.biojava.bio.alignment

Classes in org.biojava.bio.alignment that implement AlignmentElement
`class` `SimpleAlignmentElement` SimpleSimpleAlignment is a simple implementation of AlignmentElement.

Methods in org.biojava.bio.alignment that return AlignmentElement
`protected AlignmentElement` `FlexibleAlignment.getAE(Object label)`

Methods in org.biojava.bio.alignment with parameters of type AlignmentElement
`void` `FlexibleAlignment.addSequence(AlignmentElement ae)` add a new a alignment usings a location to the reference sequence.
`void` `ARAlignment.addSequence(AlignmentElement ae)`