## Uses of Class
org.biojava.bio.structure.align.helper.AligMatEl

Packages that use AligMatEl
org.biojava.bio.structure.align.pairwise: Classes for the pairwise alignment of structures.

Uses of AligMatEl in org.biojava.bio.structure.align.pairwise

Methods in org.biojava.bio.structure.align.pairwise that return AligMatEl
`AligMatEl[][]` `StrCompAlignment.getAligMat()`
`AligMatEl[][]` `Alignable.getAligMat()`
`AligMatEl` `StrCompAlignment.getAligMat(int i, int j)`

Methods in org.biojava.bio.structure.align.pairwise with parameters of type AligMatEl
`void` `StrCompAlignment.setAligMat(AligMatEl[][] al)`
`void` `Alignable.setAligMat(AligMatEl[][] alignmentMatrix)`
`void` `StrCompAlignment.setAligMat(int i, int j, AligMatEl el)`