## org.biojava.bio.structure.io.mmcif.model
Class Refine

    java.lang.Object
      org.biojava.bio.structure.io.mmcif.model.Refine

    public class Refine

extends Object

Constructor Summary
`Refine()`

Method Summary
`String[][]` `getAniso_B()`
`String` `getB_iso_max()`
`String` `getB_iso_mean()`
`String` `getB_iso_min()`
`String` `getCorrelation_coeff_Fo_to_Fc_free()`
`String` `getCorrelation_coeff_Fo_to_Fc()`
`String` `getDetails()`
`String` `getEntry_id()`
`String` `getLs_d_res_high()`
`String` `getLs_d_res_low()`
`String` `getLs_number_parameters()`
`String` `getLs_number_reflns_all()`
`String` `getLs_number_reflns_obs()`
`String` `getLs_number_reflns_R_free()`
`String` `getLs_number_restraints()`
`String` `getLs_percent_reflns_obs()`
`String` `getLs_percent_reflns_R_free()`
`String` `getLs_R_factor_all()`
`String` `getLs_R_factor_obs()`
`String` `getLs_R_factor_R_free_error_details()`
`String` `getLs_R_factor_R_free_error()`
`String` `getLs_R_factor_R_free()`
`String` `getLs_R_factor_R_work()`
`String` `getLs_redundancy_reflns_obs()`
`String` `getLs_wR_factor_R_free()`
`String` `getLs_wR_factor_R_work()`
`String` `getOccupancy_max()`
`String` `getOccupancy_min()`
`String` `getOverall_FOM_free_R_set()`
`String` `getOverall_FOM_work_R_set()`
`String` `getOverall_SU_B()`
`String` `getOverall_SU_ML()`
`String` `getOverall_SU_R_Cruickshank_DPI()`
`String` `getOverall_SU_R_free()`
`String` `getPdbx_data_cutoff_high_absF()`
`String` `getPdbx_data_cutoff_high_rms_absF()`
`String` `getPdbx_data_cutoff_low_absF()`
`String` `getPdbx_isotropic_thermal_model()`
`String` `getPdbx_ls_cross_valid_method()`
`String` `getPdbx_ls_sigma_F()`
`String` `getPdbx_ls_sigma_I()`
`String` `getPdbx_method_to_determine_struct()`
`String` `getPdbx_overall_ESU_R_Free()`
`String` `getPdbx_overall_ESU_R()`
`String` `getPdbx_overall_phase_error()`
`String` `getPdbx_R_Free_selection_details()`
`String` `getPdbx_refine_id()`
`String` `getPdbx_solvent_ion_probe_radii()`
`String` `getPdbx_solvent_shrinkage_radii()`
`String` `getPdbx_solvent_vdw_probe_radii()`
`String` `getPdbx_starting_model()`
`String` `getPdbx_stereochem_target_val_spec_case()`
`String` `getPdbx_stereochemistry_target_values()`
`String` `getSolvent_model_details()`
`String` `getSolvent_model_param_bsol()`
`String` `getSolvent_model_param_ksol()`
`void` `setAniso_B(String[][] aniso_B)`
`void` `setB_iso_max(String b_iso_max)`
`void` `setB_iso_mean(String b_iso_mean)`
`void` `setB_iso_min(String b_iso_min)`
`void` `setCorrelation_coeff_Fo_to_Fc_free(String correlation_coeff_Fo_to_Fc_free)`
`void` `setCorrelation_coeff_Fo_to_Fc(String correlation_coeff_Fo_to_Fc)`
`void` `setDetails(String details)`
`void` `setEntry_id(String entry_id)`
`void` `setLs_d_res_high(String ls_d_res_high)`
`void` `setLs_d_res_low(String ls_d_res_low)`
`void` `setLs_number_parameters(String ls_number_parameters)`
`void` `setLs_number_reflns_all(String ls_number_reflns_all)`
`void` `setLs_number_reflns_obs(String ls_number_reflns_obs)`
`void` `setLs_number_reflns_R_free(String ls_number_reflns_R_free)`
`void` `setLs_number_restraints(String ls_number_restraints)`
`void` `setLs_percent_reflns_obs(String ls_percent_reflns_obs)`
`void` `setLs_percent_reflns_R_free(String ls_percent_reflns_R_free)`
`void` `setLs_R_factor_all(String ls_R_factor_all)`
`void` `setLs_R_factor_obs(String ls_R_factor_obs)`
`void` `setLs_R_factor_R_free_error_details(String ls_R_factor_R_free_error_details)`
`void` `setLs_R_factor_R_free_error(String ls_R_factor_R_free_error)`
`void` `setLs_R_factor_R_free(String ls_R_factor_R_free)`
`void` `setLs_R_factor_R_work(String ls_R_factor_R_work)`
`void` `setLs_redundancy_reflns_obs(String ls_redundancy_reflns_obs)`
`void` `setLs_wR_factor_R_free(String ls_wR_factor_R_free)`
`void` `setLs_wR_factor_R_work(String ls_wR_factor_R_work)`
`void` `setOccupancy_max(String occupancy_max)`
`void` `setOccupancy_min(String occupancy_min)`
`void` `setOverall_FOM_free_R_set(String overall_FOM_free_R_set)`
`void` `setOverall_FOM_work_R_set(String overall_FOM_work_R_set)`
`void` `setOverall_SU_B(String overall_SU_B)`
`void` `setOverall_SU_ML(String overall_SU_ML)`
`void` `setOverall_SU_R_Cruickshank_DPI(String overall_SU_R_Cruickshank_DPI)`
`void` `setOverall_SU_R_free(String overall_SU_R_free)`
`void` `setPdbx_data_cutoff_high_absF(String pdbx_data_cutoff_high_absF)`
`void` `setPdbx_data_cutoff_high_rms_absF(String pdbx_data_cutoff_high_rms_absF)`
`void` `setPdbx_data_cutoff_low_absF(String pdbx_data_cutoff_low_absF)`
`void` `setPdbx_isotropic_thermal_model(String pdbx_isotropic_thermal_model)`
`void` `setPdbx_ls_cross_valid_method(String pdbx_ls_cross_valid_method)`
`void` `setPdbx_ls_sigma_F(String pdbx_ls_sigma_F)`
`void` `setPdbx_ls_sigma_I(String pdbx_ls_sigma_I)`
`void` `setPdbx_method_to_determine_struct(String pdbx_method_to_determine_struct)`
`void` `setPdbx_overall_ESU_R_Free(String pdbx_overall_ESU_R_Free)`
`void` `setPdbx_overall_ESU_R(String pdbx_overall_ESU_R)`
`void` `setPdbx_overall_phase_error(String pdbx_overall_phase_error)`
`void` `setPdbx_R_Free_selection_details(String pdbx_R_Free_selection_details)`
`void` `setPdbx_refine_id(String pdbx_refine_id)`
`void` `setPdbx_solvent_ion_probe_radii(String pdbx_solvent_ion_probe_radii)`
`void` `setPdbx_solvent_shrinkage_radii(String pdbx_solvent_shrinkage_radii)`
`void` `setPdbx_solvent_vdw_probe_radii(String pdbx_solvent_vdw_probe_radii)`
`void` `setPdbx_starting_model(String pdbx_starting_model)`
`void` `setPdbx_stereochem_target_val_spec_case(String pdbx_stereochem_target_val_spec_case)`
`void` `setPdbx_stereochemistry_target_values(String pdbx_stereochemistry_target_values)`
`void` `setSolvent_model_details(String solvent_model_details)`
`void` `setSolvent_model_param_bsol(String solvent_model_param_bsol)`
`void` `setSolvent_model_param_ksol(String solvent_model_param_ksol)`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### Refine

    public Refine()

Method Detail

### getEntry_id

    public String getEntry_id()

### setEntry_id

    public void setEntry_id(String entry_id)

### getLs_number_reflns_obs

    public String getLs_number_reflns_obs()

### setLs_number_reflns_obs

    public void setLs_number_reflns_obs(String ls_number_reflns_obs)

### getLs_number_reflns_all

    public String getLs_number_reflns_all()

### setLs_number_reflns_all

    public void setLs_number_reflns_all(String ls_number_reflns_all)

### getPdbx_ls_sigma_I

    public String getPdbx_ls_sigma_I()

### setPdbx_ls_sigma_I

    public void setPdbx_ls_sigma_I(String pdbx_ls_sigma_I)

### getPdbx_ls_sigma_F

    public String getPdbx_ls_sigma_F()

### setPdbx_ls_sigma_F

    public void setPdbx_ls_sigma_F(String pdbx_ls_sigma_F)

### getPdbx_data_cutoff_high_absF

    public String getPdbx_data_cutoff_high_absF()

### setPdbx_data_cutoff_high_absF

    public void setPdbx_data_cutoff_high_absF(String pdbx_data_cutoff_high_absF)

### getPdbx_data_cutoff_low_absF

    public String getPdbx_data_cutoff_low_absF()

### setPdbx_data_cutoff_low_absF

    public void setPdbx_data_cutoff_low_absF(String pdbx_data_cutoff_low_absF)

### getPdbx_data_cutoff_high_rms_absF

    public String getPdbx_data_cutoff_high_rms_absF()

### setPdbx_data_cutoff_high_rms_absF

    public void setPdbx_data_cutoff_high_rms_absF(String pdbx_data_cutoff_high_rms_absF)

### getLs_d_res_low

    public String getLs_d_res_low()

### setLs_d_res_low

    public void setLs_d_res_low(String ls_d_res_low)

### getLs_d_res_high

    public String getLs_d_res_high()

### setLs_d_res_high

    public void setLs_d_res_high(String ls_d_res_high)

### getLs_percent_reflns_obs

    public String getLs_percent_reflns_obs()

### setLs_percent_reflns_obs

    public void setLs_percent_reflns_obs(String ls_percent_reflns_obs)

### getLs_R_factor_obs

    public String getLs_R_factor_obs()

### setLs_R_factor_obs

    public void setLs_R_factor_obs(String ls_R_factor_obs)

### getLs_R_factor_all

    public String getLs_R_factor_all()

### setLs_R_factor_all

    public void setLs_R_factor_all(String ls_R_factor_all)

### getLs_R_factor_R_work

    public String getLs_R_factor_R_work()

### setLs_R_factor_R_work

    public void setLs_R_factor_R_work(String ls_R_factor_R_work)

### getLs_R_factor_R_free

    public String getLs_R_factor_R_free()

### setLs_R_factor_R_free

    public void setLs_R_factor_R_free(String ls_R_factor_R_free)

### getLs_R_factor_R_free_error

    public String getLs_R_factor_R_free_error()

### setLs_R_factor_R_free_error

    public void setLs_R_factor_R_free_error(String ls_R_factor_R_free_error)

### getLs_R_factor_R_free_error_details

    public String getLs_R_factor_R_free_error_details()

### setLs_R_factor_R_free_error_details

    public void setLs_R_factor_R_free_error_details(String ls_R_factor_R_free_error_details)

### getLs_percent_reflns_R_free

    public String getLs_percent_reflns_R_free()

### setLs_percent_reflns_R_free

    public void setLs_percent_reflns_R_free(String ls_percent_reflns_R_free)

### getLs_number_reflns_R_free

    public String getLs_number_reflns_R_free()

### setLs_number_reflns_R_free

    public void setLs_number_reflns_R_free(String ls_number_reflns_R_free)

### getLs_number_parameters

    public String getLs_number_parameters()

### setLs_number_parameters

    public void setLs_number_parameters(String ls_number_parameters)

### getLs_number_restraints

    public String getLs_number_restraints()

### setLs_number_restraints

    public void setLs_number_restraints(String ls_number_restraints)

### getOccupancy_min

    public String getOccupancy_min()

### setOccupancy_min

    public void setOccupancy_min(String occupancy_min)

### getOccupancy_max

    public String getOccupancy_max()

### setOccupancy_max

    public void setOccupancy_max(String occupancy_max)

### getB_iso_mean

    public String getB_iso_mean()

### setB_iso_mean

    public void setB_iso_mean(String b_iso_mean)

### getAniso_B

    public String[][] getAniso_B()

### setAniso_B

    public void setAniso_B(String[][] aniso_B)

### getSolvent_model_details

    public String getSolvent_model_details()

### setSolvent_model_details

    public void setSolvent_model_details(String solvent_model_details)

### getSolvent_model_param_ksol

    public String getSolvent_model_param_ksol()

### setSolvent_model_param_ksol

    public void setSolvent_model_param_ksol(String solvent_model_param_ksol)

### getSolvent_model_param_bsol

    public String getSolvent_model_param_bsol()

### setSolvent_model_param_bsol

    public void setSolvent_model_param_bsol(String solvent_model_param_bsol)

### getPdbx_ls_cross_valid_method

    public String getPdbx_ls_cross_valid_method()

### setPdbx_ls_cross_valid_method

    public void setPdbx_ls_cross_valid_method(String pdbx_ls_cross_valid_method)

### getDetails

    public String getDetails()

### setDetails

    public void setDetails(String details)

### getPdbx_starting_model

    public String getPdbx_starting_model()

### setPdbx_starting_model

    public void setPdbx_starting_model(String pdbx_starting_model)

### getPdbx_method_to_determine_struct

    public String getPdbx_method_to_determine_struct()

### setPdbx_method_to_determine_struct

    public void setPdbx_method_to_determine_struct(String pdbx_method_to_determine_struct)

### getPdbx_isotropic_thermal_model

    public String getPdbx_isotropic_thermal_model()

### setPdbx_isotropic_thermal_model

    public void setPdbx_isotropic_thermal_model(String pdbx_isotropic_thermal_model)

### getPdbx_stereochemistry_target_values

    public String getPdbx_stereochemistry_target_values()

### setPdbx_stereochemistry_target_values

    public void setPdbx_stereochemistry_target_values(String pdbx_stereochemistry_target_values)

### getPdbx_stereochem_target_val_spec_case

    public String getPdbx_stereochem_target_val_spec_case()

### setPdbx_stereochem_target_val_spec_case

    public void setPdbx_stereochem_target_val_spec_case(String pdbx_stereochem_target_val_spec_case)

### getPdbx_R_Free_selection_details

    public String getPdbx_R_Free_selection_details()

### setPdbx_R_Free_selection_details

    public void setPdbx_R_Free_selection_details(String pdbx_R_Free_selection_details)

### getPdbx_overall_ESU_R

    public String getPdbx_overall_ESU_R()

### setPdbx_overall_ESU_R

    public void setPdbx_overall_ESU_R(String pdbx_overall_ESU_R)

### getPdbx_overall_ESU_R_Free

    public String getPdbx_overall_ESU_R_Free()

### setPdbx_overall_ESU_R_Free

    public void setPdbx_overall_ESU_R_Free(String pdbx_overall_ESU_R_Free)

### getOverall_SU_ML

    public String getOverall_SU_ML()

### setOverall_SU_ML

    public void setOverall_SU_ML(String overall_SU_ML)

### getOverall_SU_B

    public String getOverall_SU_B()

### setOverall_SU_B

    public void setOverall_SU_B(String overall_SU_B)

### getPdbx_refine_id

    public String getPdbx_refine_id()

### setPdbx_refine_id

    public void setPdbx_refine_id(String pdbx_refine_id)

### getLs_redundancy_reflns_obs

    public String getLs_redundancy_reflns_obs()

### setLs_redundancy_reflns_obs

    public void setLs_redundancy_reflns_obs(String ls_redundancy_reflns_obs)

### getPdbx_overall_phase_error

    public String getPdbx_overall_phase_error()

### setPdbx_overall_phase_error

    public void setPdbx_overall_phase_error(String pdbx_overall_phase_error)

### getB_iso_min

    public String getB_iso_min()

### setB_iso_min

    public void setB_iso_min(String b_iso_min)

### getB_iso_max

    public String getB_iso_max()

### setB_iso_max

    public void setB_iso_max(String b_iso_max)

### getCorrelation_coeff_Fo_to_Fc

    public String getCorrelation_coeff_Fo_to_Fc()

### setCorrelation_coeff_Fo_to_Fc

    public void setCorrelation_coeff_Fo_to_Fc(String correlation_coeff_Fo_to_Fc)

### getCorrelation_coeff_Fo_to_Fc_free

    public String getCorrelation_coeff_Fo_to_Fc_free()

### setCorrelation_coeff_Fo_to_Fc_free

    public void setCorrelation_coeff_Fo_to_Fc_free(String correlation_coeff_Fo_to_Fc_free)

### getPdbx_solvent_vdw_probe_radii

    public String getPdbx_solvent_vdw_probe_radii()

### setPdbx_solvent_vdw_probe_radii

    public void setPdbx_solvent_vdw_probe_radii(String pdbx_solvent_vdw_probe_radii)

### getPdbx_solvent_ion_probe_radii

    public String getPdbx_solvent_ion_probe_radii()

### setPdbx_solvent_ion_probe_radii

    public void setPdbx_solvent_ion_probe_radii(String pdbx_solvent_ion_probe_radii)

### getPdbx_solvent_shrinkage_radii

    public String getPdbx_solvent_shrinkage_radii()

### setPdbx_solvent_shrinkage_radii

    public void setPdbx_solvent_shrinkage_radii(String pdbx_solvent_shrinkage_radii)

### getOverall_SU_R_Cruickshank_DPI

    public String getOverall_SU_R_Cruickshank_DPI()

### setOverall_SU_R_Cruickshank_DPI

    public void setOverall_SU_R_Cruickshank_DPI(String overall_SU_R_Cruickshank_DPI)

### getOverall_SU_R_free

    public String getOverall_SU_R_free()

### setOverall_SU_R_free

    public void setOverall_SU_R_free(String overall_SU_R_free)

### getLs_wR_factor_R_free

    public String getLs_wR_factor_R_free()

### setLs_wR_factor_R_free

    public void setLs_wR_factor_R_free(String ls_wR_factor_R_free)

### getLs_wR_factor_R_work

    public String getLs_wR_factor_R_work()

### setLs_wR_factor_R_work

    public void setLs_wR_factor_R_work(String ls_wR_factor_R_work)

### getOverall_FOM_free_R_set

    public String getOverall_FOM_free_R_set()

### setOverall_FOM_free_R_set

    public void setOverall_FOM_free_R_set(String overall_FOM_free_R_set)

### getOverall_FOM_work_R_set

    public String getOverall_FOM_work_R_set()

### setOverall_FOM_work_R_set

    public void setOverall_FOM_work_R_set(String overall_FOM_work_R_set)