## Uses of Class
org.biojava.bio.structure.gui.util.AlignedPosition

Packages that use AlignedPosition
org.biojava.bio.structure.gui: A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.bio.structure.gui.events: Some event classes for the protein structure GUIs.
org.biojava.bio.structure.gui.util: Some utility classes for the protein structure GUIs.

Uses of AlignedPosition in org.biojava.bio.structure.gui

Methods in org.biojava.bio.structure.gui that return types with arguments of type AlignedPosition
`List<AlignedPosition>` `SequenceDisplay.getAligMap()`

Uses of AlignedPosition in org.biojava.bio.structure.gui.events

Methods in org.biojava.bio.structure.gui.events with parameters of type AlignedPosition
`void` `JmolAlignedPositionListener.mouseOverPosition(AlignedPosition p)`
`void` `AlignmentPositionListener.mouseOverPosition(AlignedPosition p)`
`void` `JmolAlignedPositionListener.positionSelected(AlignedPosition p)`
`void` `AlignmentPositionListener.positionSelected(AlignedPosition p)`
`void` `JmolAlignedPositionListener.rangeSelected(AlignedPosition start, AlignedPosition end)`
`void` `AlignmentPositionListener.rangeSelected(AlignedPosition start, AlignedPosition end)`

Uses of AlignedPosition in org.biojava.bio.structure.gui.util

Method parameters in org.biojava.bio.structure.gui.util with type arguments of type AlignedPosition
`void` `SequenceScalePanel.setAligMap(List<AlignedPosition> apos)`