## Package org.biojava.bio.structure.gui

A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.

See:
Description

Class Summary
AlignmentGui: A JFrame that allows to trigger a pairwise structure alignment, either from files in a directory, or after manual upload.
BiojavaJmol: A class that provides a simple GUI for Jmol
JMatrixPanel: a JPanel that can display a difference of distance matrix and paths that have been taken for the alignment
RasmolCommandListener: a utility class that listens to Ramsol script commands in the @link `BiojavaJmol` class
ScaleableMatrixPanel: A JPanel that can display the underlying distance matrix data of the protein structure alignment algorithm.
SequenceDisplay: A sequence display that can show the results of a protein structure alignment.

## Package org.biojava.bio.structure.gui Description

A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. Possible start classes are BiojavaJmol, AlignmentGui.