## Uses of Package
org.biojava.bio.structure.align.pairwise

Packages that use org.biojava.bio.structure.align.pairwise
org.biojava.bio.structure.align: Classes for the super-imposition of structures.
org.biojava.bio.structure.align.pairwise: Classes for the pairwise alignment of structures.
org.biojava.bio.structure.gui: A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.bio.structure.gui.util: Some utility classes for the protein structure GUIs.

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.align
AlternativeAlignment Implements a class which handles one possible (alternative) solution.
FragmentPair a pair of fragments of two protein structures

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.align.pairwise
Alignable
AlternativeAlignment Implements a class which handles one possible (alternative) solution.
FragmentPair a pair of fragments of two protein structures

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.gui
AlternativeAlignment Implements a class which handles one possible (alternative) solution.
FragmentPair a pair of fragments of two protein structures

Classes in org.biojava.bio.structure.align.pairwise used by org.biojava.bio.structure.gui.util
AlternativeAlignment Implements a class which handles one possible (alternative) solution.