## Uses of Interface
org.biojava.bio.program.homologene.SimilarityType

Packages that use SimilarityType
org.biojava.bio.program.homologene: Support classes for Homologene data.

Uses of SimilarityType in org.biojava.bio.program.homologene

Classes in org.biojava.bio.program.homologene that implement SimilarityType
`static class` `SimilarityType.PlaceHolder`

Fields in org.biojava.bio.program.homologene declared as SimilarityType
`static SimilarityType` `SimilarityType.CURATED`
`static SimilarityType` `SimilarityType.MULTIPLE`
`static SimilarityType` `SimilarityType.TWIN`

Methods in org.biojava.bio.program.homologene that return SimilarityType
`SimilarityType` `SimpleOrthoPair.getSimilarity()`
`SimilarityType` `OrthoPair.getSimilarity()` gets the second orthologue in the orthology relationship.

Methods in org.biojava.bio.program.homologene with parameters of type SimilarityType
`OrthoPair` `SimpleHomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)`
`OrthoPair` `HomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)` Create a computed orthology entry.

Constructors in org.biojava.bio.program.homologene with parameters of type SimilarityType
`OrthoPairFilter.BySimilarityType(SimilarityType type)`
`SimpleOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)` constructor for the computed form of an orthology relationship.