## Uses of Class
org.biojava.directory.RegistryException

Packages that use RegistryException
org.biojava.bio.program.das: Development client for the Distributed Annotation System.
org.biojava.bio.seq.db.biofetch: Client for the OBDA BioFetch protocol.
org.biojava.bio.seq.db.biosql: General purpose Sequence storage in a relational database.
org.biojava.bio.seq.db.flat: Support for OBDA flatfile databases.
org.biojava.directory: Open Bio Sequence Database Access (OBDA) registry support.

Uses of RegistryException in org.biojava.bio.program.das

Methods in org.biojava.bio.program.das that throw RegistryException
`SequenceDBLite` `DASSequenceDBProvider.getSequenceDB(Map config)`

Uses of RegistryException in org.biojava.bio.seq.db.biofetch

Methods in org.biojava.bio.seq.db.biofetch that throw RegistryException
`SequenceDBLite` `BioFetchSequenceDBProvider.getSequenceDB(Map config)`

Uses of RegistryException in org.biojava.bio.seq.db.biosql

Methods in org.biojava.bio.seq.db.biosql that throw RegistryException
`SequenceDBLite` `BioSQLSequenceDBProvider.getSequenceDB(Map config)` Deprecated.

Uses of RegistryException in org.biojava.bio.seq.db.flat

Methods in org.biojava.bio.seq.db.flat that throw RegistryException
`SequenceDBLite` `FlatSequenceDBProvider.getSequenceDB(Map config)`

Uses of RegistryException in org.biojava.directory

Subclasses of RegistryException in org.biojava.directory
`class` `ProviderNotFoundException` `ProviderNotFoundException` is thrown when a sequence database provider can not be located.

Methods in org.biojava.directory that throw RegistryException
`void` `RegistryConfiguration.Composite.addBottomConfig(RegistryConfiguration newConfig)` Add a configuration as the most default place to look.
`void` `RegistryConfiguration.Composite.addTopConfig(RegistryConfiguration newConfig)` Add a configuration as the most authoritative place to look.
`Map` `RegistryConfiguration.getConfiguration()` `getConfiguration` returns a mapping of registry database names to collections of tag-value pairs.
`SequenceDBLite` `Registry.getDatabase(String dbName)` `getDatabase` retrieves a database instance known by a name `String`.
`SequenceDBLite` `SequenceDBProvider.getSequenceDB(Map config)` Get a sequence database.
`static RegistryConfiguration` `OBDARegistryParser.parseRegistry(BufferedReader in, String locator)` `parseRegistry` parses an Open Bioinformatics Database Access (OBDA) configuration file.