## Uses of Interface
org.biojava.bio.search.SearchContentHandler

Packages that use SearchContentHandler
org.biojava.bio.program.sax: Parsers which offer XML representations of the output from common bioinformatics tools.
org.biojava.bio.program.ssbind: Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
org.biojava.bio.search: Interfaces and classes for representing sequence similarity search results.

Uses of SearchContentHandler in org.biojava.bio.program.sax

Classes in org.biojava.bio.program.sax that implement SearchContentHandler
`class` `FastaSearchSAXParser` `FastaSearchSAXParser` is a SAX2 compliant parser for '-m 10' format output from the the Fasta search program (see the Fasta documentation for details of this format).

Uses of SearchContentHandler in org.biojava.bio.program.ssbind

Classes in org.biojava.bio.program.ssbind that implement SearchContentHandler
`class` `BlastLikeHomologyBuilder` `BlastLikeHomologyBuilder` populates a `List` with `Homology` instances created from SAX events supplied via a `SeqSimilarityAdapter`.
`class` `BlastLikeSearchBuilder` `BlastLikeSearchBuilder` will create `SeqSimilaritySearchResult`s from SAX events via a `SeqSimilarityAdapter`.
`class` `SimilarityPairBuilder` `SimilarityPairBuilder` annotates query and subject `Sequence` with `SimilarityPairFeature`s created from SAX events supplied via a `SeqSimilarityAdapter`.

Methods in org.biojava.bio.program.ssbind that return SearchContentHandler
`SearchContentHandler` `SeqSimilarityStAXAdapter.getSearchContentHandler()` `getSearchContentHandler` gets the handler which will receive the method calls generated by the adapter.
`SearchContentHandler` `SeqSimilarityAdapter.getSearchContentHandler()` `getSearchContentHandler` gets the handler which will recieve the method calls generated by the adapter.

Methods in org.biojava.bio.program.ssbind with parameters of type SearchContentHandler
`void` `SeqSimilarityStAXAdapter.setSearchContentHandler(SearchContentHandler scHandler)` `setSearchContentHandler` sets the handler which will recieve the method calls generated by the adapter.
`void` `SeqSimilarityAdapter.setSearchContentHandler(SearchContentHandler scHandler)` `setSearchContentHandler` sets the handler which will recieve the method calls generated by the adapter.

Uses of SearchContentHandler in org.biojava.bio.search

Subinterfaces of SearchContentHandler in org.biojava.bio.search
`interface` `SearchBuilder` The `SearchBuilder` interface is to be used by objects which accumulate state via a `SearchContentHandler` and then construct a `SeqSimilaritySearchResult` object.

Classes in org.biojava.bio.search that implement SearchContentHandler
`class` `FilteringContentHandler`
`class` `SearchContentAdapter` An adapter for SearchContentHandler.
`class` `SearchContentFilter` Filtering implementation of SearchContentHandler that by default passes all messages on to the next delegate in the chain.
`class` `SearchContentHandlerDebugger` This class prints to a PrintStream calls to the SearchContentHandler interface in human readable form.

Methods in org.biojava.bio.search with parameters of type SearchContentHandler
`void` `FilteringContentHandler.setSearchContentHandler(SearchContentHandler delegate)`

Constructors in org.biojava.bio.search with parameters of type SearchContentHandler
`FilteringContentHandler(BlastLikeSearchFilter filter, SearchContentHandler delegate)`
`SearchContentFilter(SearchContentHandler delegate)`