## Uses of Interface
org.biojava.bio.gui.sequence.PairwiseSequenceRenderer

Packages that use PairwiseSequenceRenderer
org.biojava.bio.gui.sequence: Graphical displays of biological sequences and associated annotations.

Uses of PairwiseSequenceRenderer in org.biojava.bio.gui.sequence

Classes in org.biojava.bio.gui.sequence that implement PairwiseSequenceRenderer
`class` `CrosshairRenderer` `CrosshairRenderer` draws a crosshair, optionally with coordinates.
`class` `PairwiseDiagonalRenderer` `PairwiseDiagonalRenderer` renders a region of similarity between two sequences as a straight line.
`class` `PairwiseFilteringRenderer` `PairwiseFilteringRenderer` wraps a `PairwiseSequenceRenderer` and filters the `PairwiseRenderContext`s passed to it.
`class` `PairwiseOverlayRenderer` `PairwiseOverlayRenderer` allows a list of other `PairwiseSequenceRenderer`s to superimpose their output.

Methods in org.biojava.bio.gui.sequence that return PairwiseSequenceRenderer
`PairwiseSequenceRenderer` `PairwiseSequencePanel.getRenderer()` `getRenderer` returns the current `PairwiseSequenceRenderer`.
`PairwiseSequenceRenderer` `PairwiseFilteringRenderer.getRenderer()` `getRenderer` return the current renderer.

Methods in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRenderer
`protected void` `PairwiseOverlayRenderer._addRenderer(PairwiseSequenceRenderer renderer)`
`protected void` `PairwiseOverlayRenderer._removeRenderer(PairwiseSequenceRenderer renderer)`
`void` `PairwiseOverlayRenderer.addRenderer(PairwiseSequenceRenderer renderer)` `addRenderer` adds a renderer.
`void` `PairwiseOverlayRenderer.removeRenderer(PairwiseSequenceRenderer renderer)` `removeRenderer` removes a renderer.
`void` `PairwiseSequencePanel.setRenderer(PairwiseSequenceRenderer renderer)` `setRenderer` sets the current `PairwiseSequenceRenderer`.
`void` `PairwiseFilteringRenderer.setRenderer(PairwiseSequenceRenderer renderer)` `setRenderer` sets the renderer.

Constructors in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRenderer
`PairwiseFilteringRenderer(PairwiseSequenceRenderer renderer)` Creates a new `PairwiseFilteringRenderer` which uses a filter which accepts all features.
`PairwiseFilteringRenderer(PairwiseSequenceRenderer renderer, FeatureFilter filter, boolean recurse)` Creates a new `PairwiseFilteringRenderer`.
`PairwiseSequenceRenderer.PairwiseRendererForwarder(PairwiseSequenceRenderer source, ChangeSupport cs)` Creates a new `PairwiseRendererForwarder`.