## Uses of Interface
org.biojava.bio.seq.io.SequenceBuilder

Packages that use SequenceBuilder
org.biojava.bio.seq.io: Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojavax.bio.seq.io: Classes to support the I/O of RichSequence and Bioentry objects.

Uses of SequenceBuilder in org.biojava.bio.seq.io

Classes in org.biojava.bio.seq.io that implement SequenceBuilder
`class` `EmblProcessor` Deprecated. Use org.biojavax.bio.seq.io framework instead
`class` `FastaDescriptionLineParser` Deprecated. Use org.biojavax.bio.seq.io.FastaFormat
`class` `GenbankProcessor` Deprecated. Use org.biojavax.bio.seq.io framework instead
`class` `OrganismParser` Deprecated. Use org.biojavax.bio.taxa framework instead
`class` `ProteinRefSeqProcessor` Deprecated. Use org.biojavax.bio.seq.io framework instead
`class` `SequenceBuilderBase` Basic SequenceBuilder implementation which accumulates all notified information.
`class` `SequenceBuilderFilter` Base-class for builders that pass filtered events onto another builder.
`class` `SequenceDBSequenceBuilder` This SequenceBuilder has a variety of modes of operation.
`class` `SimpleAssemblyBuilder` Basic SequenceBuilder implementation which accumulates all notified information and creates a SimpleAssembly.
`class` `SimpleSequenceBuilder` Basic SequenceBuilder implementation which accumulates all notified information and creates a SimpleSequence.
`class` `SmartSequenceBuilder` Basic SequenceBuilder implementation which accumulates all notified information and chooses a sequence implementation suited to the size of the sequence.
`class` `SwissprotProcessor` Deprecated. Use org.biojavax.bio.seq.io framework instead

Methods in org.biojava.bio.seq.io that return SequenceBuilder
`SequenceBuilder` `SequenceBuilderFilter.getDelegate()` Retrieve the delegate that is wrapped.
`SequenceBuilder` `SwissprotProcessor.Factory.makeSequenceBuilder()`
`SequenceBuilder` `SequenceBuilderFactory.makeSequenceBuilder()`
`SequenceBuilder` `ProteinRefSeqProcessor.Factory.makeSequenceBuilder()`
`SequenceBuilder` `OrganismParser.Factory.makeSequenceBuilder()`
`SequenceBuilder` `GenbankProcessor.Factory.makeSequenceBuilder()`
`SequenceBuilder` `FastaDescriptionLineParser.Factory.makeSequenceBuilder()`
`SequenceBuilder` `EmblProcessor.Factory.makeSequenceBuilder()`
`SequenceBuilder` `SwissprotProcessor.Factory.makeSequenceBuilder(String theSource)`
`SequenceBuilder` `GenbankProcessor.Factory.makeSequenceBuilder(String theSource)`

Constructors in org.biojava.bio.seq.io with parameters of type SequenceBuilder
`EmblProcessor(SequenceBuilder delegate)` Deprecated.
`FastaDescriptionLineParser(SequenceBuilder delegate)` Deprecated.
`GenbankProcessor(SequenceBuilder theDelegate)` Deprecated.
`GenbankProcessor(SequenceBuilder theDelegate, String theSource)` Deprecated.
`OrganismParser(SequenceBuilder delegate, TaxonFactory taxonFactory, TaxonParser taxonParser, String sciNameKey, String commonNameKey, String ncbiTaxonKey)` Deprecated.
`ProteinRefSeqProcessor(SequenceBuilder theDelegate)` Deprecated.
`SequenceBuilderFilter(SequenceBuilder delegate)` Create a new SeqIOFilter that will forward events on to another listener.
`SwissprotProcessor(SequenceBuilder delegate)` Deprecated.
`SwissprotProcessor(SequenceBuilder delegate, String theSource)` Deprecated. Constructor that sets the source of the feature to theSource.

Uses of SequenceBuilder in org.biojavax.bio.seq.io

Subinterfaces of SequenceBuilder in org.biojavax.bio.seq.io
`interface` `RichSequenceBuilder` An interface for objects that can build RichSequences.

Classes in org.biojavax.bio.seq.io that implement SequenceBuilder
`class` `SimpleRichSequenceBuilder` Constructs BioEntry objects by listening to events.

Methods in org.biojavax.bio.seq.io that return SequenceBuilder
`SequenceBuilder` `SimpleRichSequenceBuilderFactory.makeSequenceBuilder()`