## Uses of Interface
org.biojavax.bio.BioEntry

Packages that use BioEntry
org.biojavax: The Biojava extensions packages, classes that extend the core biojava functionality
org.biojavax.bio: Classes to represent biological entities and their relationships.
org.biojavax.bio.db: Interactions between biojavax objects and a DB.
org.biojavax.bio.db.biosql: Interface between biojava and biosql databases
org.biojavax.bio.seq: Rich implementations of Sequences, Locations and Features.
org.biojavax.bio.seq.io: Classes to support the I/O of RichSequence and Bioentry objects.

Uses of BioEntry in org.biojavax

Methods in org.biojavax that return BioEntry
`BioEntry` `DummyCrossReferenceResolver.getRemoteBioEntry(CrossRef cr)` Given the `CrossRef` return the corresponding `BioEntry` All responses are null.
`BioEntry` `CrossReferenceResolver.getRemoteBioEntry(CrossRef cr)` Given the `CrossRef` return the corresponding `BioEntry`

Uses of BioEntry in org.biojavax.bio

Classes in org.biojavax.bio that implement BioEntry
`class` `SimpleBioEntry` Reference implementation of a BioEntry object which has no features or sequence.

Methods in org.biojavax.bio that return BioEntry
`BioEntry` `SimpleBioEntryRelationship.getObject()` Returns the object of this relationship (ie.
`BioEntry` `BioEntryRelationship.getObject()` Returns the object of this relationship (ie.
`BioEntry` `SimpleBioEntryRelationship.getSubject()` Returns the subject of this relationship (ie.
`BioEntry` `BioEntryRelationship.getSubject()` Returns the subject of this relationship (ie.
`BioEntry` `BioEntryIterator.nextBioEntry()`

Constructors in org.biojavax.bio with parameters of type BioEntry
`SimpleBioEntryRelationship(BioEntry object, BioEntry subject, ComparableTerm term, Integer rank)` Creates a new instance of SimpleBioEntryRelationship.

Uses of BioEntry in org.biojavax.bio.db

Methods in org.biojavax.bio.db that return BioEntry
`BioEntry` `HashBioEntryDB.getBioEntry(String id)`
`BioEntry` `BioEntryDBLite.getBioEntry(String id)` Retrieve a single BioEntry by its id.
`BioEntry` `AbstractRichSequenceDB.getBioEntry(String id)`

Methods in org.biojavax.bio.db with parameters of type BioEntry
`void` `HashBioEntryDB.addBioEntry(BioEntry seq)` Add a BioEntry, the name of the BioEntry will be used as the ID
`void` `BioEntryDBLite.addBioEntry(BioEntry seq)` Adds a sequence to the database.
`void` `AbstractRichSequenceDB.addBioEntry(BioEntry seq)`
`void` `AbstractBioEntryDB.addBioEntry(BioEntry seq)`
`protected void` `HashBioEntryDB.addBioEntry(String id, BioEntry seq)`

Uses of BioEntry in org.biojavax.bio.db.biosql

Methods in org.biojavax.bio.db.biosql that return BioEntry
`BioEntry` `BioSQLBioEntryDB.getBioEntry(String id)`
`BioEntry` `BioSQLCrossReferenceResolver.getRemoteBioEntry(CrossRef cr)` Given the `CrossRef` return the corresponding `BioEntry`

Methods in org.biojavax.bio.db.biosql with parameters of type BioEntry
`void` `BioSQLBioEntryDB._addBioEntry(BioEntry seq)`
`void` `BioSQLBioEntryDB.addBioEntry(BioEntry seq)`

Uses of BioEntry in org.biojavax.bio.seq

Subinterfaces of BioEntry in org.biojavax.bio.seq
`interface` `RichSequence` A rich sequence is a combination of a org.biojavax.bio.Bioentry and a Sequence.

Classes in org.biojavax.bio.seq that implement BioEntry
`class` `SimpleRichSequence` A simple implementation of RichSequence.
`class` `ThinRichSequence` A simple implementation of RichSequence.

Methods in org.biojavax.bio.seq that return BioEntry
`BioEntry` `RichSequence.IOTools.SingleRichSeqIterator.nextBioEntry()`

Uses of BioEntry in org.biojavax.bio.seq.io

Methods in org.biojavax.bio.seq.io that return BioEntry
`BioEntry` `RichStreamReader.nextBioEntry()`
`BioEntry` `HashedFastaIterator.nextBioEntry()`