## Uses of Interface
org.biojava.bio.symbol.GappedSymbolList

Packages that use GappedSymbolList
org.biojava.bio.alignment: Classes to generate and describe sequence alignments.
org.biojava.bio.seq: Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.seq.impl: Standard in-memory implementations of `Sequence` and `Feature`.
org.biojava.bio.symbol: Representation of the Symbols that make up a sequence, and locations within them.

Uses of GappedSymbolList in org.biojava.bio.alignment

Methods in org.biojava.bio.alignment with parameters of type GappedSymbolList
`void` `FlexibleAlignment.removeGaps(GappedSymbolList seq, int start, int length)` because there is a bug in GappedSymbolList

Uses of GappedSymbolList in org.biojava.bio.seq

Subinterfaces of GappedSymbolList in org.biojava.bio.seq
`interface` `GappedSequence` Extension of GappedSymbolList which also projects features into the gapped coordinate system.

Uses of GappedSymbolList in org.biojava.bio.seq.impl

Classes in org.biojava.bio.seq.impl that implement GappedSymbolList
`class` `SimpleGappedSequence` Simple implementation of GappedSequence.

Uses of GappedSymbolList in org.biojava.bio.symbol

Classes in org.biojava.bio.symbol that implement GappedSymbolList
`class` `SimpleGappedSymbolList` This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps.

Constructors in org.biojava.bio.symbol with parameters of type GappedSymbolList
`SimpleGappedSymbolList(GappedSymbolList gappedSource)` Create a new SimpleGappedSymbolList that will view source, inheriting all existing gaps.