## Package org.biojava.bio.structure.gui.util

Some utility classes for the protein structure GUIs.

See:
Description

Interface Summary
StructurePairSelector: To be implemented by JPanels that are part of the GUI to trigger structure aligmnents.

Class Summary
AlignedPosition
AlignmentCalc: A class that obtains two structures via DAS and aligns them This is done in a separate thread.
AlternativeAlignmentFrame: a frame showing the alternative alignments, which are the result of a structure superimposition
CoordManager: a class that manages the conversion of sequence coordinate system to JPanel drawing coordinates
MenuCreator: Create the menu for BiojavaJmol
PDBDirPanel: A class to define where a structure for the alignment is coming from
PDBServerPanel: A class to define where a structure for the alignment is coming from
PDBUploadPanel: A JPanel to upload 2 PDB files.
SequenceMouseListener: a mouse listener for the AbstractChainRenderer class it listens to all mouse events and triggeres appropriate SequenceListener and FeatureListener events
SequenceScalePanel: A class that draws a Sequence as a rectangle, a scale display over it.

## Package org.biojava.bio.structure.gui.util Description

Some utility classes for the protein structure GUIs. Possible start classes are one level higher at org.biojava.bio.structure.gui.BiojavaJmol, and org.biojava.bio.structure.gui.AlignmentGui.