## Hierarchy For Package org.biojava.bio.structure.align.pairwise

Package Hierarchies:
  All Packages

## Class Hierarchy

- java.lang.Object
  - org.biojava.bio.structure.align.pairwise.AligNPE
  - org.biojava.bio.structure.align.pairwise.AltAligComparator (implements java.util.Comparator<T>)
  - org.biojava.bio.structure.align.pairwise.AlternativeAlignment
  - org.biojava.bio.structure.align.pairwise.FragmentJoiner
  - org.biojava.bio.structure.align.pairwise.FragmentPair
  - org.biojava.bio.structure.align.pairwise.Gotoh
  - org.biojava.bio.structure.align.pairwise.StrCompAlignment (implements org.biojava.bio.structure.align.pairwise.Alignable)

## Interface Hierarchy

- org.biojava.bio.structure.align.pairwise.Alignable