## Uses of Interface
org.biojava.bio.symbol.CodonPref

Packages that use CodonPref
org.biojava.bio.symbol: Representation of the Symbols that make up a sequence, and locations within them.

Uses of CodonPref in org.biojava.bio.symbol

Classes in org.biojava.bio.symbol that implement CodonPref
`class` `SimpleCodonPref` a simple no-frills implementation of the CodonPref object that encapsulates codon preference data.

Methods in org.biojava.bio.symbol that return CodonPref
`CodonPref` `CodonPrefFilter.ByName.getCodonPref()`
`static CodonPref` `CodonPrefTools.getCodonPreference(String id)` get the specified codon preference.
`static CodonPref[]` `CodonPrefTools.readFromXML(InputStream prefStream)`
`static CodonPref` `CodonPrefTools.readFromXML(InputStream prefStream, String name)` reads a specified CodonPref from an file.

Methods in org.biojava.bio.symbol with parameters of type CodonPref
`void` `CodonPrefFilter.put(CodonPref codonPref)` handles storage of a CodonPref object
`void` `CodonPrefFilter.AcceptAll.put(CodonPref codonPref)`
`void` `CodonPrefFilter.ByName.put(CodonPref codonPref)`
`void` `CodonPrefFilter.EverythingToXML.put(CodonPref codonPref)`
`static void` `CodonPrefTools.writeToXML(CodonPref codonPref, PrintWriter writer)` write out a specified CodonPref object in XML format.