## Hierarchy For Package org.biojavax.bio.seq.io

Package Hierarchies:
  All Packages

## Class Hierarchy

- java.lang.Object
  - org.biojavax.bio.seq.io.FastaHeader
  - org.biojavax.bio.seq.io.GenbankLocationParser
  - org.biojavax.bio.seq.io.HashedFastaIterator (implements org.biojavax.bio.seq.RichSequenceIterator)
  - java.io.InputStream (implements java.io.Closeable)
    - java.io.FilterInputStream
      - java.io.BufferedInputStream
        - org.biojavax.bio.seq.io.DebuggingRichSeqIOListener (implements org.biojavax.bio.seq.io.RichSeqIOListener)
  - org.biojavax.bio.seq.io.RichSeqIOAdapter (implements org.biojavax.bio.seq.io.RichSeqIOListener)
    - org.biojavax.bio.seq.io.SimpleRichSequenceBuilder (implements org.biojavax.bio.seq.io.RichSequenceBuilder)
  - org.biojavax.bio.seq.RichSequence.Terms
    - org.biojavax.bio.seq.io.EMBLFormat.Terms
    - org.biojavax.bio.seq.io.EMBLxmlFormat.Terms
    - org.biojavax.bio.seq.io.GenbankFormat.Terms
    - org.biojavax.bio.seq.io.INSDseqFormat.Terms
    - org.biojavax.bio.seq.io.UniProtFormat.Terms
    - org.biojavax.bio.seq.io.UniProtXMLFormat.Terms
  - org.biojavax.bio.seq.io.RichSequenceFormat.BasicFormat (implements org.biojavax.bio.seq.io.RichSequenceFormat)
    - org.biojavax.bio.seq.io.EMBLxmlFormat
    - org.biojavax.bio.seq.io.INSDseqFormat
    - org.biojavax.bio.seq.io.RichSequenceFormat.HeaderlessFormat
      - org.biojavax.bio.seq.io.EMBLFormat
      - org.biojavax.bio.seq.io.FastaFormat
      - org.biojavax.bio.seq.io.GenbankFormat
      - org.biojavax.bio.seq.io.UniProtFormat
    - org.biojavax.bio.seq.io.UniProtXMLFormat
  - org.biojavax.bio.seq.io.RichStreamReader (implements org.biojavax.bio.seq.RichSequenceIterator)
  - org.biojavax.bio.seq.io.RichStreamWriter
  - org.biojavax.bio.seq.io.SimpleRichSequenceBuilderFactory (implements org.biojavax.bio.seq.io.RichSequenceBuilderFactory)
  - org.biojavax.bio.seq.io.UniProtCommentParser
  - org.biojavax.bio.seq.io.UniProtCommentParser.Event
  - org.biojavax.bio.seq.io.UniProtCommentParser.Interaction
  - org.biojavax.bio.seq.io.UniProtCommentParser.Isoform
  - org.biojavax.bio.seq.io.UniProtCommentParser.SeqCaution
  - org.biojavax.bio.seq.io.UniProtLocationParser

## Interface Hierarchy

- org.biojava.bio.seq.io.SeqIOListener
  - org.biojavax.bio.seq.io.RichSeqIOListener
    - org.biojavax.bio.seq.io.RichSequenceBuilder (also extends org.biojava.bio.seq.io.SequenceBuilder)
  - org.biojava.bio.seq.io.SequenceBuilder
    - org.biojavax.bio.seq.io.RichSequenceBuilder (also extends org.biojavax.bio.seq.io.RichSeqIOListener)
- org.biojava.bio.seq.io.SequenceBuilderFactory
  - org.biojavax.bio.seq.io.RichSequenceBuilderFactory
- org.biojava.bio.seq.io.SequenceFormat
  - org.biojavax.bio.seq.io.RichSequenceFormat