## Uses of Class
org.biojava.bio.proteomics.Protease

Packages that use Protease
org.biojava.bio.proteomics: Utilities to aid in performing various physical analysis of proteins.

Uses of Protease in org.biojava.bio.proteomics

Methods in org.biojava.bio.proteomics that return Protease
`static Protease` `ProteaseManager.createProtease(String cleaveRes, boolean endoProtease, String name)`
`static Protease` `ProteaseManager.createProtease(String cleaveRes, boolean endoProtease, String notCleaveRes, String name)`
`static Protease` `ProteaseManager.createProtease(SymbolList cleaveRes, boolean endoProtease, String name)`
`static Protease` `ProteaseManager.createProtease(SymbolList cleaveRes, boolean endoProtease, SymbolList notCleaveRes, String name)` Creates and registers a new Protease.
`static Protease` `ProteaseManager.getArg_C()`
`static Protease` `ProteaseManager.getAsp_N()`
`static Protease` `ProteaseManager.getChymotrypsin()`
`static Protease` `ProteaseManager.getCNBr()`
`static Protease` `ProteaseManager.getGlu_C_bicarbonate()`
`static Protease` `ProteaseManager.getGlu_C_phosphate()`
`static Protease` `ProteaseManager.getLys_C()`
`static Protease` `ProteaseManager.getProteaseByName(String proteaseName)` Gets a Protease instance by name.
`static Protease` `Protease.getProteaseByName(String proteaseName)` Retrieves a reference to the named Protease.
`static Protease` `ProteaseManager.getTrypsin()`

Methods in org.biojava.bio.proteomics with parameters of type Protease
`static void` `ProteaseManager.registerProtease(Protease prot)` Registers a protease and ensures its flyweight status
`void` `Digest.setProtease(Protease protease)`