## Package org.biojava.bio.structure.align.pairwise

Classes for the pairwise alignment of structures.

See:
Description

Interface Summary
Alignable

Class Summary
AligNPE
AltAligComparator: a comparator to sort AlternativeAlignments based on their number of equivalent residues and RMSD.
AlternativeAlignment: Implements a class which handles one possible (alternative) solution.
FragmentJoiner: Joins the initial Fragments together to larger Fragments
FragmentPair: a pair of fragments of two protein structures
Gotoh: a class to perform Gotoh algorithm
StrCompAlignment

## Package org.biojava.bio.structure.align.pairwise Description

Classes for the pairwise alignment of structures.