H_beta = Atom('h')
C_gamma_2 = Atom('c')
H_gamma_1_2 = Atom('h')
H_gamma_1_3 = Atom('h')
C_gamma_1 = Atom('c')
H_delta_1_2 = Atom('h')
H_delta_1_3 = Atom('h')
H_delta_1_1 = Atom('h')
C_beta = Atom('c')
H_gamma_2_1 = Atom('h')
H_gamma_2_2 = Atom('h')
H_gamma_2_3 = Atom('h')
C_delta_1 = Atom('c')
bonds = [Bond(H_beta, C_beta), Bond(C_gamma_2, C_beta), Bond(H_gamma_2_1, C_gamma_2), Bond(H_gamma_2_2, C_gamma_2), Bond(H_gamma_2_3, C_gamma_2), Bond(C_gamma_1, C_beta), Bond(H_gamma_1_2, C_gamma_1), Bond(H_gamma_1_3, C_gamma_1), Bond(C_delta_1, C_gamma_1), Bond(H_delta_1_1, C_delta_1), Bond(H_delta_1_2, C_delta_1), Bond(H_delta_1_3, C_delta_1), ]
name = 'ile_sidechain'
pdbmap = [('ILE', {'1HD1': H_delta_1_1, '3HG1': H_gamma_1_3, 'CG2': C_gamma_2, 'HB': H_beta, 'CD1': C_delta_1, '1HG2': H_gamma_2_1, '3HD1': H_delta_1_3, '2HD1': H_delta_1_2, '3HG2': H_gamma_2_3, 'CB': C_beta, 'CG1': C_gamma_1, '2HG1': H_gamma_1_2, '2HG2': H_gamma_2_2, }, ), ]
pdb_alternative = {'1HG1': '3HG1', 'HG22': '2HG2', 'HG23': '3HG2', 'HD11': '1HD1', 'HG21': '1HG2', 'HD12': '2HD1', 'HD13': '3HD1', 'HG13': '3HG1', 'HG12': '2HG1', 'HG11': '3HG1', 'CD': 'CD1', 'HD1': '1HD1', 'HD2': '2HD1', 'HD3': '3HD1', }
amber_atom_type = {H_delta_1_2: 'HC', H_delta_1_1: 'HC', C_gamma_2: 'CT', H_gamma_2_1: 'HC', H_gamma_1_2: 'HC', H_gamma_2_3: 'HC', H_delta_1_3: 'HC', H_beta: 'HC', C_beta: 'CT', H_gamma_1_3: 'HC', H_gamma_2_2: 'HC', C_delta_1: 'CT', C_gamma_1: 'CT', }
