sidechain = Group('lys_sidechain')
peptide = Group('peptide_nt')
bonds = [Bond(peptide.C_alpha, sidechain.C_beta), ]
symbol = 'Lys'
amber_charge = {peptide.H_2: 0.2165, sidechain.C_delta: -0.0608, peptide.C: 0.7214, sidechain.N_zeta: -0.3764, sidechain.H_beta_3: 0.0283, sidechain.H_beta_2: 0.0283, sidechain.H_zeta_2: 0.3382, sidechain.H_delta_3: 0.0633, sidechain.H_delta_2: 0.0633, sidechain.C_gamma: -0.0048, sidechain.H_zeta_1: 0.3382, sidechain.H_epsilon_3: 0.1171, sidechain.C_beta: 0.0212, peptide.H_3: 0.2165, sidechain.H_epsilon_2: 0.1171, sidechain.H_gamma_2: 0.0121, peptide.O: -0.6013, sidechain.C_epsilon: -0.0181, sidechain.H_zeta_3: 0.3382, peptide.N: 0.0966, sidechain.H_gamma_3: 0.0121, peptide.C_alpha: -0.0015, peptide.H_alpha: 0.118, peptide.H_1: 0.2165, }
name = 'lysine'
chain_links = [None, peptide.C]
