Bio::Tools::AlignFactory - Base object for alignment factories You wont be using this as an object, but using a dervied class like Bio::Tools::pSW Holds common Alignment Factory attributes in place http://bio.perl.org/ or birney@sanger.ac.uk The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

kbyte
Title : kbyte() Usage : set/gets the amount of memory able to be used Function : : $factory->kbyte(200); : Returns : Argument : memory in kilobytes

report
Title : report() Usage : set/gets the report boolean to issue reports or not Function : : $factory->report(1); # reporting goes on : Returns : n/a Argument : 1 or 0

set_memory_and_report
Title : set_memory_and_report Usage : Only used by subclasses. Function: Example : Returns : Args :