Bio::LocatableSeq - A Sequence object with start/end points on it Give standard usage here # a normal sequence object $locseq->seq(); $locseq->id(); # has start,end points $locseq->start(); $locseq->end(); # inheriets off RangeI, so range operations possible $locseq->overlaps($seqfeature);

Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bio.perl.org/MailList.html - About the mailing lists The locatable sequence object was developed mainly because the SimpleAlign object requires this functionality, and in the rewrite of the Sequence object we had to decide what to do with this. It is, to be honest, not well integrated with the rest of bioperl, for example, the trunc() function does not return a LocatableSeq object, as some might have thought. There are all sorts of nasty gotcha's about interactions between coordinate systems when these sort of objects are used.

Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bio.perl.org http://bio.perl.org/bioperl-bugs/ The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

start
Title : start Usage : $obj->start($newval) Function: Returns : value of start Args : newvalue (optional)

end
Title : end Usage : $obj->end($newval) Function: Returns : value of end Args : newvalue (optional)

strand
Title : strand Usage : $obj->strand($newval) Function: Returns : value of strand Args : newvalue (optional)

get_nse
Title : get_nse Usage : Function: Example : Returns : Args :