Bio::SeqFeature::Similarity - A sequence feature based on similarity # obtain a similarity feature somehow print "significance: ", $sim_fea->significance(), "\n"; print "bit score: ", $sim_fea->bits(), "\n"; print "score: ", $sim_fea->score(), "\n"; print "fraction of identical residues: ", $sim_fea->frac_identical(), "\n"; This module is basically a sequence features based on similarity, and therefore has support for measures assessing the similarity. Everything else is inherited from the Bio::SeqFeature::Generic manpage.

Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bio.perl.org/MailList.html - About the mailing lists

Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bio.perl.org http://bio.perl.org/bioperl-bugs/ Email hlapp@gmx.net or hilmar.lapp@pharma.novartis.com Describe contact details here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

significance
Title : significance Usage : $evalue = $obj->significance(); $obj->significance($evalue); Function: Returns : Args :

bits
Title : bits Usage : $bits = $obj->bits(); $obj->bits($value); Function: Returns : Args :

frac_identical
Title : frac_identical Usage : $fracid = $obj->frac_identical(); $obj->frac_identical($value); Function: Returns : Args :

seqlength
Title : seqlength Usage : $len = $obj->seqlength(); $obj->seqlength($len); Function: Returns : Args :

seqdesc
Title : seqdesc Usage : $desc = $obj->seqdesc(); $obj->seqdesc($desc); Function: At present this method is a shorthand for $obj->annotation()->description(). Note that this is not stored in the tag system and hence will not be included in the return value of gff_string(). Returns : Args :