Bio::LiveSeq::Exon - Range abstract class for LiveSeq # documentation needed Class for EXON objects. They consist of a beginlabel, an endlabel (both referring to a LiveSeq DNA object) and a strand. The strand could be 1 (forward strand, default), -1 (reverse strand). Email: Insana@ebi.ac.uk, jinsana@gmx.net Address: EMBL Outstation, European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton Cambs. CB10 1SD, United Kingdom The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new
Title : new Usage : $exon1 = Bio::LiveSeq::Exon-> new(-seq => $objref, -start => $startlabel, -end => $endlabel, -strand => 1); Function: generates a new Bio::LiveSeq::Exon Returns : reference to a new object of class Exon Errorcode -1 Args : two labels and an integer

get_Transcript
Title : get_Transcript Usage : $transcript = $obj->get_Transcript() Function: retrieves the reference to the object of class Transcript (if any) attached to a LiveSeq object Returns : object reference Args : none Note : only Exons that compose a Transcript (i.e. those created out of a CDS Entry-Feature) will have an attached Transcript