Bio::SeqIO::FTHelper - Helper class for Embl/Genbank feature tables Used by Bio::SeqIO::EMBL to help process the Feature Table Represents one particular Feature with the following fields key - the key of the feature loc - the location string of the feature <other fields> - other fields

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bio.perl.org http://bio.perl.org/bioperl-bugs/ Email birney@ebi.ac.uk Describe contact details here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

_generic_seqfeature
Title : _generic_seqfeature Usage : $fthelper->_generic_seqfeature($annseq, "GenBank") Function: processes fthelper into a generic seqfeature Returns : TRUE on success and otherwise FALSE Args : Bio::Seq, string indicating the source (GenBank/EMBL/SwissProt)

_parse_loc
Title : _parse_loc Usage : $fthelper->_parse_loc( $loc_string) Function: Parses the given location string and returns a location object with start() and end() and strand() set appropriately. Note that this method is private. Returns : location object or 0 on fail Args : location string

from_SeqFeature
Title : from_SeqFeature Usage : @fthelperlist = Bio::SeqIO::FTHelper::from_SeqFeature($sf, $context_annseq); Function: constructor of fthelpers from SeqFeatures : : The additional annseq argument is to allow the building of FTHelper : lines relevant to particular sequences (ie, when features are spread over : enteries, knowing how to build this) Returns : an array of FThelpers Args : seq features

key
Title : key Usage : $obj->key($newval) Function: Example : Returns : value of key Args : newvalue (optional)

loc
Title : loc Usage : $obj->loc($newval) Function: Example : Returns : value of loc Args : newvalue (optional)

field
Title : field Usage : Function: Example : Returns : Args :

add_field
Title : add_field Usage : Function: Example : Returns : Args :