
                             EMBOSS: scopparse
     _________________________________________________________________
   
                               Program scopparse
                                       
Function

   Reads raw-, and writes EMBL-like, scop classification files
   
Description

   This is part of Jon Ison's protein structure analysis package.
   
   This package is still being developed.
   
   Please ignore this program until further details can be documented.
   
   All further queries should go to Jon Ison. (Jon Ison)
   
Usage

   Here is a sample session with scopparse:

% scopparse

Command line arguments

   Mandatory qualifiers:
  [-infilea]           infile     Name of scop classification file for input
                                  (raw format dir.cla.scop.txt_X.XX file)
  [-infileb]           infile     Name of description file for input (raw
                                  format dir.des.scop.txt_X.XX file)
  [-outfile]           outfile    Name of scop file for output (embl-like
                                  format)

   Optional qualifiers: (none)
   Advanced qualifiers: (none)
   General qualifiers:
  -help                bool       report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   

   Mandatory qualifiers Allowed values Default
   [-infilea]
   (Parameter 1) Name of scop classification file for input (raw format
   dir.cla.scop.txt_X.XX file) Input file dir.cla.scop.txt_1.57
   [-infileb]
   (Parameter 2) Name of description file for input (raw format
   dir.des.scop.txt_X.XX file) Input file dir.des.scop.txt_1.57
   [-outfile]
   (Parameter 3) Name of scop file for output (embl-like format) Output
   file Escop.dat
   Optional qualifiers Allowed values Default
   (none)
   Advanced qualifiers Allowed values Default
   (none)
   
Input file format

Output file format

Data files

Notes

   None.
   
References

   None.
   
Warnings

   None.
   
Diagnostic Error Messages

   None.
   
Exit status

   It always exits with status 0.
   
Known bugs

   None.
   
See also

   Program name Description
   cutgextract Extract data from CUTG
   domainer Build domain coordinate files
   nrscope Converts redundant EMBL-format SCOP file to non-redundant one
   pdbtosp Convert raw swissprot:pdb equivalence file to embl-like format
   printsextract Extract data from PRINTS
   prosextract Builds the PROSITE motif database for patmatmotifs to
   search
   rebaseextract Extract data from REBASE
   scope Convert raw scop classification file to embl-like format
   seqnr Converts redundant database results to a non-redundant set of
   hits
   tfextract Extract data from TRANSFAC
   
Author(s)

   This application was written by Jon Ison (jison@hgmp.mrc.ac.uk)
   
History

   Written (date) - author.
   
Target users

   This program is intended to be used by everyone and everything, from
   naive users to embedded scripts.
   
Comments
