PyMOL>load dat/embed01.p1m
PyMOL>embed peptide
 Embed: read 108 lines.
PyMOL>load_embedded peptide
 CmdLoad: PDB-string loaded into object "peptide", state 1.
PyMOL>count_atoms
 count_atoms: 107 atoms
PyMOL>hide everything, peptide
PyMOL>show sticks, peptide
PyMOL>set valence
 Setting: valence set to on.
PyMOL>set ray_default_renderer,2
 Setting: ray_default_renderer set to 2.
PyMOL>ray
 RayRenderTest: obtained 207 graphics primitives.
PyMOL>load dat/embed02.p1m
PyMOL>embed sm, mol
 Embed: read 78 lines.
PyMOL>load_embedded sm
 ExecutiveLoad: content loaded into object "sm", through state 1.
PyMOL>hide everything, sm
PyMOL>show sticks, sm
PyMOL>set valence
 Setting: valence set to on.
PyMOL>ray
 RayRenderTest: obtained 269 graphics primitives.
PyMOL>load dat/embed03.p1m
PyMOL>embed ligands,sdf
 Embed: read 923 lines.
PyMOL>load_embedded ligands
 ObjectMoleculeReadStr: read through molecule 1.
 ObjectMoleculeReadStr: read through molecule 2.
 ObjectMoleculeReadStr: read through molecule 3.
 ObjectMoleculeReadStr: read through molecule 4.
 ObjectMoleculeReadStr: read through molecule 5.
 ObjectMoleculeReadStr: read through molecule 6.
 ObjectMoleculeReadStr: read through molecule 7.
 ObjectMoleculeReadStr: read through molecule 8.
 ObjectMoleculeReadStr: read through molecule 9.
 ObjectMoleculeReadStr: read through molecule 10.
 ExecutiveLoad: content loaded into object "ligands", through state 10.
PyMOL>hide everything, ligands
PyMOL>show sticks, ligands
PyMOL>set valence
 Setting: valence set to on.
PyMOL>frame 5
PyMOL>ray
 RayRenderTest: obtained 343 graphics primitives.
PyMOL>load dat/embed04.p1m
PyMOL>embed m2, mol2
 Embed: read 963 lines.
PyMOL>load_embedded m2
 ObjectMoleculeReadStr: read through molecule 1.
 ObjectMoleculeReadStr: read through molecule 2.
 ObjectMoleculeReadStr: read through molecule 3.
 ObjectMoleculeReadStr: read through molecule 4.
 ObjectMoleculeReadStr: read through molecule 5.
 ObjectMoleculeReadStr: read through molecule 6.
 ObjectMoleculeReadStr: read through molecule 7.
 ObjectMoleculeReadStr: read through molecule 8.
 ObjectMoleculeReadStr: read through molecule 9.
 ObjectMoleculeReadStr: read through molecule 10.
 ExecutiveLoad: content loaded into object "m2", through state 16.
PyMOL>hide everything, m2
PyMOL>show sticks, m2
PyMOL>set valence
 Setting: valence set to on.
PyMOL>ray
 RayRenderTest: obtained 356 graphics primitives.
PyMOL>load dat/embed05.p1m
PyMOL>embed ligand, mol
 Embed: read 77 lines.
PyMOL>embed protein
 Embed: read 227 lines.
PyMOL>load_embedded ligand
 ExecutiveLoad: content loaded into object "ligand", through state 1.
PyMOL>load_embedded protein
 CmdLoad: PDB-string loaded into object "protein", state 1.
PyMOL>hide lines, ligand
PyMOL>show sticks, ligand
PyMOL>set valence
 Setting: valence set to on.
PyMOL>dist hbond, protein, ligand, mode=2
 Executive: object "hbond" created.
PyMOL>ray
 RayRenderTest: obtained 891 graphics primitives.
PyMOL>print cmd.get_state()
5
PyMOL>print cmd.get_names()
['peptide', 'sm', 'ligands', 'm2', 'ligand', 'protein', 'hbond']
