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Bio.GFF3.FeatureHierSequences

Documentation

data FeatureHierSequences | Source

Instances

Show FeatureHierSequences

features :: FeatureHierSequences -> Set Feature | Source

sequences :: FeatureHierSequences -> [Sequence a] | Source

fromLists :: (Error e, MonadError e m) => [Feature] -> [Sequence a] -> m FeatureHierSequences | Source

parse :: (Error e, MonadError e m) => ByteString -> m FeatureHierSequences | Source

lookupId :: (Error e, MonadError e m) => FeatureHierSequences -> SeqName -> m Feature | Source

parents :: FeatureHierSequences -> Feature -> [Feature] | Source

children :: FeatureHierSequences -> Feature -> [Feature] | Source

seqData :: (Error e, MonadError e m) => FeatureHierSequences -> SeqLoc -> m SeqData | Source

getSequence :: (Error e, MonadError e m) => FeatureHierSequences -> SeqName -> m SeqData | Source

featureSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a) | Source

runGFF :: FilePath -> ErrorT String (Reader FeatureHierSequences) a -> ErrorT String IO a | Source

runGFFIO :: FilePath -> ErrorT String (ReaderT FeatureHierSequences IO) a -> ErrorT String IO a | Source

asksGFF :: (Error e, MonadError e m, MonadReader FeatureHierSequences m) => (FeatureHierSequences -> a -> m b) -> a -> m b | Source

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