# rpsblast.rb

Path: | lib/bio/appl/blast/rpsblast.rb
Last Update: | Tue Feb 01 03:26:53 +0000 2011

# bio/appl/blast/rpsblast.rb - NCBI RPS Blast default output parser

Copyright: | Copyright (C) 2008 Naohisa Goto <ng@bioruby.org>
License: | The Ruby License

$Id:$

## Description

NCBI RPS Blast (Reversed Position Specific Blast) default (-m 0 option) output parser class, Bio::Blast::RPSBlast::Report and related classes/modules.

## References

- Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
- ftp.ncbi.nih.gov/blast/documents/rpsblast.html
- www.ncbi.nlm.nih.gov/Structure/cdd/cdd_help.shtml

### Required files

bio/appl/blast/format0 bio/io/flatfile

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