# DOMAINATRIX Applications
Keywords: EMBOSS, European Molecular Biology Open Source Software Suite, bioinformatics, EBI, European Bioinformatics Institute, Molecular Biology, Computational Biology, Open Source, Software, Database

The DOMAINATRIX programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

### Applications in the current domainatrix release

Program name | Description
--- | ---
cathparse | Generates DCF file from raw CATH files
domainnr | Removes redundant domains from a DCF file
domainreso | Remove low resolution domains from a DCF file
domainseqs | Adds sequence records to a DCF file
domainsse | Add secondary structure records to a DCF file
scopparse | Generate DCF file from raw SCOP files
ssematch | Search a DCF file for secondary structure matches