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<to be read again> 
                   \penalty 
l.39 \include{acknowledgments}
                               [1

]
\openout2 = `acknowledgments.aux'.

 (./acknowledgments.tex) [2

] (./intro.tex
Chapter 1.

Package natbib Warning: Citation `KinTomWit00' undefined on input line 41.


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[3


] [4]
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[]\T1/aer/m/n/12 Please di-rect in-quiries and prob-lems about Zelig to our lis
t-serv at []zelig@lists.gking.harvard.edu[].
 []

(./citeZelig.tex)) [5] [6

] (./install.tex
Chapter 2.

Overfull \hbox (7.46567pt too wide) in paragraph at lines 46--54
\T1/aer/m/n/12 down-load the lat-est []in-staller for Win-dows[] at [][]$\T1/ae
tt/m/n/12 http : / / cran . us . r-[]project . org / bin / windows /
 []

[7

] [8] [9] [10]

LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 237.

[11] [12] [13]
Overfull \hbox (1034.93843pt too wide) in paragraph at lines 416--416
 []\T1/aett/m/n/12 % rm Zelig_XX.tar.gz zoo_XX.tar.gz sandwich_XX.tar.gz MCMCpa
ck_XX.tar.gz coda_XX.tar.gz lattice_XX.tar.gz mvtnorm_XX.tar.gz mvtnorm_XX.tar.
gz VGAM_XX.tar.gz sna_XX.tar.gz systemfit_XX.tar.gz nnet_XX.tar.gz  gee_XX.tar.
gz mgcv_XX.tar.gz[] 
 []


LaTeX Warning: Reference `table.compat' on page 14 undefined on input line 455.


) (./syntax.tex [14]
Chapter 3.
[15

]
LaTeX Font Info:    Try loading font information for TS1+aer on input line 72.
 (/usr/lib64/R/share/texmf/ts1aer.fd
File: ts1aer.fd 
)
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 (/usr/lib64/R/share/texmf/ts1aett.fd
File: ts1aett.fd 
)
LaTeX Font Info:    Try loading font information for TS1+cmtt on input line 87.

(/usr/share/texmf/tex/latex/base/ts1cmtt.fd
File: ts1cmtt.fd 1999/05/25 v2.5h Standard LaTeX font definitions
)
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 [16]

LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 92.

[17]
Overfull \hbox (17.68726pt too wide) in paragraph at lines 159--161
[]\T1/aer/m/n/12 If your dataset is in a \T1/aer/bx/n/12 tab- or space-delimite
d .txt file\T1/aer/m/n/12 , use \T1/aett/m/n/12 read.table("mydata.txt") 
 []


Overfull \hbox (3.71233pt too wide) in paragraph at lines 169--169
 []\T1/aett/m/n/12 > library(foreign)                           # Load the fore
ign package. 
 []


Overfull \hbox (3.71233pt too wide) in paragraph at lines 171--171
 []\T1/aett/m/n/12 > spss.data <- read.spss("mydata.sav", to.data.frame = TRUE)
 # For SPSS.[] 
 []


Overfull \hbox (3.71233pt too wide) in paragraph at lines 182--182
 []\T1/aett/m/n/12 > library(Zelig)                              # Loads the Ze
lig library. 
 []

[18] [19]
Overfull \hbox (5.18848pt too wide) in paragraph at lines 282--282
[]\T1/aett/m/n/12 > logic <- c(TRUE, FALSE, TRUE, TRUE, TRUE) # Creates \TS1/cm
tt/m/n/12 `\T1/aett/m/n/12 logic\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 (5 T/F value
s).[] 
 []


Overfull \hbox (5.1774pt too wide) in paragraph at lines 283--283
[]\T1/aett/m/n/12 > var1 <- 10:20                             # All integers be
tween 10 and 20.[] 
 []


Overfull \hbox (3.7234pt too wide) in paragraph at lines 300--300
 []\T1/aett/m/n/12 > var3 <- log(var2) - 2*var1      # Create \TS1/cmtt/m/n/12 
`\T1/aett/m/n/12 var3\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 using math operations.[
] 
 []

[20]
Overfull \hbox (5.21063pt too wide) in paragraph at lines 366--366
[]\T1/aett/m/n/12 > var <- data$var1               # Copies \TS1/cmtt/m/n/12 `\
T1/aett/m/n/12 var1\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 from \TS1/cmtt/m/n/12 `\T
1/aett/m/n/12 data\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 , creating \TS1/cmtt/m/n/12
 `\T1/aett/m/n/12 var\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 .[] 
 []


LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 367.

[21]
Overfull \hbox (5.21063pt too wide) in paragraph at lines 376--376
[]\T1/aett/m/n/12 > data$new.var <- var             # Generate \TS1/cmtt/m/n/12
 `\T1/aett/m/n/12 new.var\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 in \TS1/cmtt/m/n/12
 `\T1/aett/m/n/12 data\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 using \TS1/cmtt/m/n/12
 `\T1/aett/m/n/12 var\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 .[] 
 []


LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 383.


Overfull \hbox (3.7234pt too wide) in paragraph at lines 402--402
 []\T1/aett/m/n/12 > x == y                               # Only the 3rd \TS1/c
mtt/m/n/12 `\T1/aett/m/n/12 x\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 exactly equals[
] 
 []


Overfull \hbox (9.89136pt too wide) in paragraph at lines 419--419
 []  \T1/aett/m/n/12 [1] FALSE FALSE FALSE FALSE  TRUE       #  than its counte
rpart in \TS1/cmtt/m/n/12 `\T1/aett/m/n/12 y\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 .
[] 
 []


Overfull \hbox (9.89136pt too wide) in paragraph at lines 429--429
 []\T1/aett/m/n/12 [1]  TRUE  TRUE FALSE  TRUE FALSE #  less than their counter
parts in \TS1/cmtt/m/n/12 `\T1/aett/m/n/12 y\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 .
[] 
 []

[22]
Overfull \hbox (3.7234pt too wide) in paragraph at lines 461--461
 []\T1/aett/m/n/12 > v1 <- a > 3                    # Creates the matrix \TS1/c
mtt/m/n/12 `\T1/aett/m/n/12 v1\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 (T/F values).[
] 
 []


Overfull \hbox (3.7234pt too wide) in paragraph at lines 462--462
 []\T1/aett/m/n/12 > v2 <- b > 3                    # Creates the matrix \TS1/c
mtt/m/n/12 `\T1/aett/m/n/12 v2\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 (T/F values).[
] 
 []


Overfull \hbox (3.7234pt too wide) in paragraph at lines 463--463
 []\T1/aett/m/n/12 > v1 & v2                        # Checks if the (i,j) value
 in \TS1/cmtt/m/n/12 `\T1/aett/m/n/12 v1\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 and[
] 
 []


Overfull \hbox (3.7234pt too wide) in paragraph at lines 464--464
 []      \T1/aett/m/n/12 [,1] [,2] [,3]  [,4]       #  \TS1/cmtt/m/n/12 `\T1/ae
tt/m/n/12 v2\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 are both TRUE.  Because columns[
] 
 []


Overfull \hbox (9.89136pt too wide) in paragraph at lines 465--465
 []\T1/aett/m/n/12 [1,] FALSE TRUE TRUE FALSE       #  2-4 of \TS1/cmtt/m/n/12 
`\T1/aett/m/n/12 v1\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 are TRUE, and columns 1-3
[] 
 []

[23]
Overfull \hbox (5.1774pt too wide) in paragraph at lines 501--501
[]\T1/aett/m/n/12 > var3 <- var1 < var2               # Creates a vector of n T
/F observations.[] 
 []


Overfull \hbox (5.19955pt too wide) in paragraph at lines 530--530
[]\T1/aett/m/n/12 > var1[var1 == "don\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 t know"]
 <- NA   # Replaces all "don\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 t know"\TS1/cmtt/
m/n/12 '\T1/aett/m/n/12 s with NA\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 s.[] 
 []

[24]) (./Zcommands.tex [25]
Chapter 4.
<xymatrix 3x5 368> [26

]

Package natbib Warning: Citation `KinZen06' on page 27 undefined on input line 
51.


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52.


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ne 52.

[27]
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 []\T1/aett/m/n/12 > z.out <- zelig(vote ~ race + educate, model = "logit", dat
a = turnout)[] 
 []


Overfull \hbox (9.88028pt too wide) in paragraph at lines 96--96
 []\T1/aett/m/n/12 > summary(s.out)                                     # Numer
ical summary.[] 
 []


Overfull \hbox (9.88028pt too wide) in paragraph at lines 97--97
 []\T1/aett/m/n/12 > plot(s.out)                                        # Graph
ical summary.[] 
 []


Overfull \hbox (3.71233pt too wide) in paragraph at lines 103--103
 []\T1/aett/m/n/12 > z.out <- zelig(vote ~ race + educate, model = "logit", dat
a = turnout)[] 
 []


Package natbib Warning: Citation `SchSla01' on page 28 undefined on input line 
109.

[28]
Overfull \hbox (3.71233pt too wide) in paragraph at lines 141--141
 []\T1/aett/m/n/12 > z.out <- zelig(vote ~ race + educate, model = "logit", dat
a = turnout)[] 
 []

[29]
Overfull \hbox (9.88028pt too wide) in paragraph at lines 224--226
[]\T1/aett/m/n/12 x.out <- setx(z.out, fn = list(numeric = mean, ordered = medi
an, others =
 []


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e 253.


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ne 256.


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0.


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ne 260.


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 265.


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ne 274.

[30]
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 []\T1/aett/m/n/12 > z.out <- zelig(vote ~ age + race, model = "logit", data = 
turnout)[] 
 []

[31]
Overfull \hbox (9.88028pt too wide) in paragraph at lines 374--376
[]\T1/aett/m/n/12 s.out <- sim(z.out, x = x.out, x1 = NULL, num = c(1000, 100),
 bootstrap =
 []

[32]
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[]\T1/aer/m/n/12 Zelig sim-u-lates pa-ram-e-ters from clas-si-cal \T1/aer/m/it/
12 max-i-mum like-li-hood \T1/aer/m/n/12 mod-els us-ing asymp-
 []

[33]

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[34]

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[35]

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[36]

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[37] [38]
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[]\T1/aett/m/n/12 # Check that the expected values are identical.  You may do t
his for each qi.[] 
 []


LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 794.

) (./graphs.tex [39]
Chapter 5.
[40

] [41]
Overfull \hbox (5.97571pt too wide) in paragraph at lines 111--111
[]\T1/aer/bx/n/17.28 Adding Points, Lines, and Leg-ends to Ex-ist-ing Plots 
 []

[42] [43] <figs/sample1.pdf, id=786, 451.6875pt x 289.08pt>
File: figs/sample1.pdf Graphic file (type pdf)

<use figs/sample1.pdf> [44 <./figs/sample1.pdf>]
<figs/sample2.pdf, id=800, 325.215pt x 252.945pt>
File: figs/sample2.pdf Graphic file (type pdf)
 <use figs/sample2.pdf>
Overfull \hbox (5.1774pt too wide) in paragraph at lines 234--234
[]\T1/aett/m/n/12 > lines(density(turnout$income))              # Adds the kern
el density line.[] 
 []


LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 235.

[45 <./figs/sample2.pdf>]

Package natbib Warning: Citation `KatKin99' undefined on input line 252.


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File: figs/ternary.pdf Graphic file (type pdf)
 <use figs/ternary.pdf> [46 <./figs/ternary.pdf>]

Package natbib Warning: Citation `KinZen02' undefined on input line 268.


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File: figs/roc.pdf Graphic file (type pdf)
 <use figs/roc.pdf> [47 <./figs/roc.pdf>]

Package natbib Warning: Citation `KinTomWit00' undefined on input line 282.

<figs/vertci.pdf, id=844, 433.62pt x 289.08pt>
File: figs/vertci.pdf Graphic file (type pdf)
 <use figs/vertci.pdf>) [48 <./figs/vertci.pdf>] [49

] (./robjects.tex
Chapter 6.

Overfull \hbox (3.71233pt too wide) in paragraph at lines 27--27
 []\T1/aett/m/n/12 > 2 > 3                         # Basic logical operations, 
including >,[] 
 []


Overfull \hbox (9.88028pt too wide) in paragraph at lines 29--29
 []                                \T1/aett/m/n/12 #   <= (less than or equals)
, == (exactly[] 
 []


Overfull \hbox (3.71233pt too wide) in paragraph at lines 31--31
 []\T1/aett/m/n/12 > 3 >= 2 && 100 == 1000/10      # Advanced logical operation
s, including[] 
 []


Overfull \hbox (9.88028pt too wide) in paragraph at lines 32--32
 []   \T1/aett/m/n/12 [1] TRUE                     #   & (and), && (if and only
 if), | (or),[] 
 []

[50

]
Overfull \hbox (34.5521pt too wide) in paragraph at lines 78--78
 []\T1/aett/m/n/12 > a <- 1:5               # Creates a vector of integers from
 1 to 5 inclusive[] 
 []


Overfull \hbox (3.7234pt too wide) in paragraph at lines 84--84
 []\T1/aett/m/n/12 > a[5] <- 3.14         # Inserts 3.14 as the 5th value in th
e vector \TS1/cmtt/m/n/12 `\T1/aett/m/n/12 a\TS1/cmtt/m/n/12 '[] 
 []


Overfull \hbox (34.5521pt too wide) in paragraph at lines 85--85
 []\T1/aett/m/n/12 > a[5:7] <- c(2, 4, 7) # Replaces the 5th through 7th values
 with 2, 4, and 7[] 
 []

[51]
Overfull \hbox (28.38968pt too wide) in paragraph at lines 112--112
 []\T1/aett/m/n/12 > x <- c("like", "dislike", "hate", "like", "don\TS1/cmtt/m/
n/12 '\T1/aett/m/n/12 t know", "like", "dislike")[] 
 []


Overfull \hbox (11.05815pt too wide) in paragraph at lines 144--144
 []        \T1/aett/m/n/12 [,1] [,2] [,3]       # Note that when assigning a ve
ctor to a[] 
 []

[52]
Overfull \hbox (17.23718pt too wide) in paragraph at lines 154--154
 []\T1/aett/m/n/12 > y <- c(55, 33, 12)         # Creates another vector \TS1/c
mtt/m/n/12 `\T1/aett/m/n/12 y\TS1/cmtt/m/n/12 ' \T1/aett/m/n/12 of 3 values.[] 

 []


Overfull \hbox (11.05815pt too wide) in paragraph at lines 155--155
 []\T1/aett/m/n/12 > rbind(x, y)                # Creates a 2 x 3 matrix.  Note
 that row[] 
 []


Overfull \hbox (11.05815pt too wide) in paragraph at lines 159--159
 []\T1/aett/m/n/12 > cbind(x, y)                # Creates a 3 x 2 matrix.  Note
 that the[] 
 []


Overfull \hbox (3.71233pt too wide) in paragraph at lines 176--176
 []\T1/aett/m/n/12 > loo[1,3] <- 13          # Inserts 13 as the value for row 
1, column 3.[] 
 []


Overfull \hbox (9.88582pt too wide) in paragraph at lines 188--188
 []\T1/aett/m/n/12 > a <- matrix(8, 2, 3)       # Creates a 2 x 3 matrix popula
ted with 8\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 s.[] 
 []


Overfull \hbox (9.88582pt too wide) in paragraph at lines 189--189
 []\T1/aett/m/n/12 > b <- matrix(9, 2, 3)       # Creates a 2 x 3 matrix popula
ted with 9\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 s.[] 
 []


Overfull \hbox (16.05377pt too wide) in paragraph at lines 191--191
 []   \T1/aett/m/n/12 , , 1                     #  level [,,1] populated with m
atrix a (8\TS1/cmtt/m/n/12 '\T1/aett/m/n/12 s),[] 
 []


Overfull \hbox (16.04823pt too wide) in paragraph at lines 195--195
 []   \T1/aett/m/n/12 [2,]    8    8    8       # Use square brackets to extrac
t values.  For[] 
 []

[53]
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 []   \T1/aett/m/n/12 , , 2                     #  value in the first row of th
e second level.[] 
 []


Overfull \hbox (9.89136pt too wide) in paragraph at lines 230--230
 []\T1/aett/m/n/12 > c[1, 2]     # Pull out the value in the first row, second 
column of \TS1/cmtt/m/n/12 `\T1/aett/m/n/12 c\TS1/cmtt/m/n/12 '[] 
 []

[54]

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Overfull \hbox (5.1774pt too wide) in paragraph at lines 268--268
[]\T1/aett/m/n/12 > L[[4]] <- c(1, 4, 6, 8)          # Inserts the vector into 
the 4th position[] 
 []


LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 272.


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[]\T1/aett/m/n/12 > dat[1:10,]         # Extracts observations 1-10 and all ass
ociated variables 
 []

[55]) (./programmingstatements.tex [56]
Chapter 7.
[57

]
Overfull \hbox (5.1774pt too wide) in paragraph at lines 84--84
[]\T1/aett/m/n/12 > x <- array(dim = c(5,2,3))       # A 3D array of 3 stacked 
5 by 2 matrices.[] 
 []

[58]

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[59]

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\T1/aer/m/n/12 The sin-gle loop pro-ce-dure eval-u-ates each el-e-ment in \T1/a
ett/m/n/12 idx \T1/aer/m/n/12 against the vec-tor \T1/aett/m/n/12 mydata$state\
T1/aer/m/n/12 .
 []


Overfull \hbox (22.21619pt too wide) in paragraph at lines 186--186
 []\T1/aett/m/n/12 z.out <- zelig(y ~ x1 + x2 + x3, by = "state", data = mydata
, model = "ls")[] 
 []


Overfull \hbox (28.38414pt too wide) in paragraph at lines 192--192
 []\T1/aett/m/n/12 se <- array()                          # Initalize the empty
 data structure.[] 
 []


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 []\T1/aett/m/n/12 for (i in 1:50) {                      # vcov() creates the 
variance matrix[] 
 []


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 []  \T1/aett/m/n/12 se[i] <- sqrt(vcov(z.out[[i]])[2,2]) # Since we have an in
tercept, the 2nd[] 
 []


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 []\T1/aett/m/n/12 }                                      # diagonal value corr
esponds to x1.[] 
 []

[60]

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) (./newModels.tex [61]
Chapter 8.
[62

]
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[]\T1/aett/m/n/12 # Given the formula above, programmers can use the following 
standard commands[] 
 []


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[63]

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