Class Specialization
ExactReversableFragment
A type for ungapped, pairwise segment matches that may be in reverse orientation.

Fragment

ExactReversableFragment

Fragment<TSize, ExactReversableFragment<TSpec> >
Include Headers
seqan/refinement.h
Parameters

TSize | The Size type of the underlying sequences. Metafunctions: Size
TSpec | The specializing type for the graph. Metafunctions: Spec

Remarks
Compared to the ExactFragment specialzing type of Fragment, a ExactReversableFragment stores an additional bool value to indicate whether a match is in reverse orientation or not.
Specialization of
Fragment
Member Functions

Fragment | Constructor.
Fragment | Constructor.

Functions

fragmentBegin | Gets the begin position for this fragment or this vertex descriptor in the sequence. (Fragment)
fragmentLength | Gets the length of the label of a given vertex descriptor in the sequence. (Fragment)
getProjectedPosition | Projects a position of one sequence taking part in a pairwise match onto the other sequence. (Fragment)
isReversed | Returns true if the segment match is in reverse orientation. (Fragment)
label | Gets the label that is associated with this vertex descriptor or the sequence that is associated with a fragment. (Fragment)
matchRefinement | Refines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the segments partly overlap. They are either identical (fully overlapping) or non-overlapping. (Fragment)
sequenceId | Gets the sequence id that is associated with this vertex descriptor or with a sequence of a fragment. (Fragment)

See Also
ExactFragment
SeqAn - Sequence Analysis Library - www.seqan.de

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