# DOMALIGN Applications
Keywords: EMBOSS, European Molecular Biology Open Source Software Suite, bioinformatics, EBI, European Bioinformatics Institute, Molecular Biology, Computational Biology, Open Source, Software, Database

The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

### Applications in the current domalign release

Program name | Description
--- | ---
allversusall | Sequence similarity data from all-versus-all comparison
domainalign | Generate alignments (DAF file) for nodes in a DCF file
domainrep | Reorder DCF file to identify representative structures
seqalign | Extend alignments (DAF file) with sequences (DHF file)