application: elipop [
  documentation: "Prediction of lipoproteins"
  groups: "Protein:Motifs"
  embassy: "cbstools"
]

section: input [
  information: "Input section"
  type: "page"
]

  seqset: sequence [
    parameter: "Y"
    type: "any"
    aligned: "Y"
    relations: "EDAM: Sequence alignment data"                             
  ]

endsection: input

section: required [
  information: "Required section"
  type: "page"
]

endsection: required

section: additional [
  information: "Additional section"
  type: "page"
]


endsection: additional

section: advanced [
  information: "Advanced section"
  type: "page"
]

  boolean: plot [
    default: "N"
    information: "Produce graphics"
    relations: "EDAM: Generic boolean"                                     
  ]

  boolean: short [
    default: "N"
    information: "Short output"
    relations: "EDAM: Generic boolean"                                     
  ]

  boolean: html [
    default: "N"
    information: "Html output"
    relations: "EDAM: Generic boolean"                                     
  ]

  boolean: format [
    default: "N"
    information: "Run LipoPformat script"
    relations: "EDAM: Generic boolean"                                     
  ]

  integer: cutoff [
    default: "-3"
    information: "Log-odds cutoff"
    relations: "EDAM: Generic integer"                                     
  ]

endsection: advanced

section: output [
  information: "Output section"
  type: "page"
]

  outfile: outfile [
    parameter: "Y"
    knowntype: "elipop output"
    relations:  "EDAM:Signal peptide sequence map report"                  
  ]

endsection: output
