## Hierarchy For Package org.biojava.bio.symbol

Package Hierarchies:
  All Packages

## Class Hierarchy

- class java.lang.Object
  - class org.biojava.bio.symbol.AbstractAlphabet (implements org.biojava.bio.symbol.FiniteAlphabet)
    - class org.biojava.bio.symbol.SimpleAlphabet (implements java.io.Serializable)
  - class org.biojava.bio.symbol.AbstractSymbolList (implements org.biojava.bio.symbol.SymbolList)
    - class org.biojava.bio.symbol.GappedSymbolList (implements java.io.Serializable)
    - class org.biojava.bio.symbol.OrderNSymbolList (implements java.io.Serializable)
    - class org.biojava.bio.symbol.ReverseSymbolList (implements java.io.Serializable)
    - class org.biojava.bio.symbol.SimpleAlignment (implements org.biojava.bio.symbol.Alignment, java.io.Serializable)
    - class org.biojava.bio.symbol.SimpleSymbolList (implements java.io.Serializable)
    - class org.biojava.bio.symbol.TranslatedSymbolList (implements org.biojava.bio.symbol.SymbolList)
    - class org.biojava.bio.symbol.WindowedSymbolList (implements java.io.Serializable)
  - class org.biojava.bio.symbol.AllTokensAlphabet (implements org.biojava.bio.symbol.FiniteAlphabet, java.io.Serializable)
  - class org.biojava.bio.symbol.Alphabet.EmptyAlphabet (implements org.biojava.bio.symbol.FiniteAlphabet, java.io.Serializable)
  - class org.biojava.bio.symbol.AlphabetManager
  - class org.biojava.bio.symbol.AlphabetManager.ListWrapper
  - class org.biojava.bio.symbol.CompoundLocation (implements org.biojava.bio.symbol.Location, java.io.Serializable)
  - class org.biojava.bio.symbol.CrossProductSymbolNameParser (implements java.io.Serializable, org.biojava.bio.symbol.SymbolParser)
  - class org.biojava.bio.symbol.DoubleAlphabet (implements org.biojava.bio.symbol.Alphabet, java.io.Serializable)
  - class org.biojava.bio.symbol.DoubleAlphabet.DoubleSymbol (implements org.biojava.bio.symbol.AtomicSymbol, java.io.Serializable)
  - class org.biojava.bio.symbol.FixedWidthParser (implements java.io.Serializable, org.biojava.bio.symbol.SymbolParser)
  - class org.biojava.bio.symbol.IntegerAlphabet (implements org.biojava.bio.symbol.Alphabet, java.io.Serializable)
  - class org.biojava.bio.symbol.IntegerAlphabet.IntegerSymbol (implements org.biojava.bio.symbol.AtomicSymbol, java.io.Serializable)
  - class org.biojava.bio.symbol.Location.EmptyLocation (implements org.biojava.bio.symbol.Location, java.io.Serializable)
  - class org.biojava.bio.symbol.Location.LocationComparator (implements java.util.Comparator, java.io.Serializable)
  - class org.biojava.bio.symbol.NameParser (implements java.io.Serializable, org.biojava.bio.symbol.SymbolParser)
  - class org.biojava.bio.symbol.PointLocation (implements org.biojava.bio.symbol.Location, java.io.Serializable)
  - class org.biojava.bio.symbol.RangeLocation (implements org.biojava.bio.symbol.Location, java.io.Serializable)
  - class org.biojava.bio.symbol.SimpleAtomicSymbol (implements org.biojava.bio.symbol.AtomicSymbol)
  - class org.biojava.bio.symbol.SimpleSymbol (implements java.io.Serializable, org.biojava.bio.symbol.Symbol)
  - class org.biojava.bio.symbol.SimpleTranslationTable (implements java.io.Serializable, org.biojava.bio.symbol.TranslationTable)
  - class org.biojava.bio.symbol.SingletonAlphabet (implements org.biojava.bio.symbol.FiniteAlphabet, java.io.Serializable)
  - class org.biojava.bio.symbol.SuffixTree (implements java.io.Serializable)
  - class org.biojava.bio.symbol.SuffixTree.SuffixNode (implements java.io.Serializable)
  - class org.biojava.bio.symbol.SymbolList.EmptySymbolList (implements java.io.Serializable, org.biojava.bio.symbol.SymbolList)
  - class java.lang.Throwable (implements java.io.Serializable)
    - class java.lang.Exception
      - class org.biojava.bio.BioException
        - class org.biojava.bio.symbol.IllegalAlphabetException
        - class org.biojava.bio.symbol.IllegalSymbolException
  - class org.biojava.bio.symbol.TokenParser (implements java.io.Serializable, org.biojava.bio.symbol.SymbolParser)

## Interface Hierarchy

- interface org.biojava.bio.Annotatable
  - interface org.biojava.bio.symbol.Alphabet
    - interface org.biojava.bio.symbol.CrossProductAlphabet
    - interface org.biojava.bio.symbol.FiniteAlphabet
  - interface org.biojava.bio.symbol.Symbol
    - interface org.biojava.bio.symbol.AtomicSymbol
    - interface org.biojava.bio.symbol.CrossProductSymbol
- interface org.biojava.bio.symbol.Location
- interface org.biojava.bio.symbol.SymbolList
  - interface org.biojava.bio.symbol.Alignment
- interface org.biojava.bio.symbol.SymbolParser
- interface org.biojava.bio.symbol.TranslationTable