
                             EMBOSS: seqretfeat
     _________________________________________________________________
   
                              Program seqretfeat
                                       
Function

   Reads and writes (returns) a sequence and outputs the feature table
   for it
   
Description

Usage

   Here is a sample session with seqretfeat.

% seqretfeat

Command line arguments

   Mandatory qualifiers: (none)
   Optional qualifiers: (none)
   Advanced qualifiers:
   -featignore         string     Comma delimited list of Features NOT to be
                                  output
   -featonlyallow      string     Comma delimited list of Features to be
                                  output,
                                  will have no effect if featignore is set
   -tagignore          string     Comma delimited list of Tags NOT to be
                                  output
   -tagonlyallow       string     Comma delimited list of Tags to be output,
                                  will have no effect if tagignore is set
   -sortbytype         bool       Sort output features by their type
   -sortbystart        bool       Sort output features by their start position
   

   Mandatory qualifiers Allowed values Default
   (none)
   Optional qualifiers Allowed values Default
   (none)
   Advanced qualifiers Allowed values Default
   -featignore Comma delimited list of Features NOT to be output Any
   string is accepted An empty string is accepted
   -featonlyallow Comma delimited list of Features to be output, will
   have no effect if featignore is set Any string is accepted An empty
   string is accepted
   -tagignore Comma delimited list of Tags NOT to be output Any string is
   accepted An empty string is accepted
   -tagonlyallow Comma delimited list of Tags to be output, will have no
   effect if tagignore is set Any string is accepted An empty string is
   accepted
   -sortbytype Sort output features by their type Yes/No No
   -sortbystart Sort output features by their start position Yes/No No
   
Input file format

Output file format

Data files

Notes

References

Warnings

Diagnostic Error Messages

Exit status

Known bugs

See also

   Program name Description
   
Author(s)

   This application was written by Peter Rice (pmr@sanger.ac.uk)
   Informatics Division, The Sanger Centre, Wellcome Trust Genome Campus,
   Hinxton, Cambridge, CB10 1SA, UK.
   
History

Target users

   This program is intended to be used by everyone and everything, from
   naive users to embedded scripts.
   
Comments
