# Genetic Code Table
#
# Obtained from: http://www.ncbi.nlm.nih.gov/collab/FT/genetic_codes.html
# and: http://www3.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wprintgc?mode=c
#
# Differences from the Standard Code: 
# 
#         Code 3          Standard
# 
#  AUA    Met  M          Ile  I
#  CUU    Thr  T          Leu  L
#  CUC    Thr  T          Leu  L
#  CUA    Thr  T          Leu  L
#  CUG    Thr  T          Leu  L
#  UGA    Trp  W          Ter  *
# 
#  CGA    absent          Arg  R
#  CGC    absent          Arg  R
# 
# 
# Systematic Range: 
# 
# Saccharomyces cerevisiae, Candida glabrata, Hansenula saturnus,
# Schizosaccharomyces pombe, and Kluyveromyces thermotolerans
# (Clark-Walker and Weiller, 1994)
# 
# Comments:
# 
# The remaining CGN codons are rare in Saccharomyces cerevisiae and absent
# in Candida glabrata (= Torulopsis glabrata). 
# 
# The AUA codon is common in the gene var1 coding for the single
# mitochondrial ribosomal protein, but rare in genes encoding the enzymes. 
# 
# The coding assignments of the AUA (Met or Ile) and CUU (possibly Leu,
# not Thr) are uncertain in Hansenula saturnus. 
# 
# The codon UGA is rarely used and probably encodes Trp in
# Schizosaccharomyces pombe.  Sequence comparisons do not suggest other
# nonstandard codon assignments in this species. 
# 
# The coding assignment of Thr to CUN is uncertain in Kluyveromyces
# thermotolerans Clark-Walker and Weiller, 1994). 


Genetic Code [3]
 
Yeast Mitochondrial
 
AAs  =   FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG
Starts = ----------------------------------MM----------------------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
