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Bio.GFF3.FeatureHierSequences
Documentation
data FeatureHierSequences | Source
Instances
Show FeatureHierSequences
features :: FeatureHierSequences -> Set Feature | Source
sequences :: FeatureHierSequences -> [Sequence a] | Source
fromLists :: (Error e, MonadError e m) => [Feature] -> [Sequence a] -> m FeatureHierSequences | Source
parse :: (Error e, MonadError e m) => ByteString -> m FeatureHierSequences | Source
lookupId :: (Error e, MonadError e m) => FeatureHierSequences -> SeqName -> m Feature | Source
parents :: FeatureHierSequences -> Feature -> [Feature] | Source
children :: FeatureHierSequences -> Feature -> [Feature] | Source
seqData :: (Error e, MonadError e m) => FeatureHierSequences -> SeqLoc -> m SeqData | Source
getSequence :: (Error e, MonadError e m) => FeatureHierSequences -> SeqName -> m SeqData | Source
featureSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a) | Source
runGFF :: FilePath -> ErrorT String (Reader FeatureHierSequences) a -> ErrorT String IO a | Source
runGFFIO :: FilePath -> ErrorT String (ReaderT FeatureHierSequences IO) a -> ErrorT String IO a | Source
asksGFF :: (Error e, MonadError e m, MonadReader FeatureHierSequences m) => (FeatureHierSequences -> a -> m b) -> a -> m b | Source
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