| bio-0.4.6: A bioinformatics library | Source code | Contents | Index
Bio.GFF3.Feature
Documentation
data GFFAttr | Source
Constructors
GFFAttr |
attrTag :: !ByteString |
attrValues :: ![ByteString] |
Instances
Eq GFFAttr
Ord GFFAttr
Show GFFAttr
data Feature | Source
Constructors
Feature |
seqid :: !ByteString |
source :: !ByteString |
ftype :: !ByteString |
start :: !Offset |
end :: !Offset |
score :: !(Maybe Double) |
strand :: !(Maybe Strand) |
phase :: !(Maybe Offset) |
attributes :: ![GFFAttr] |
Instances
Eq Feature
Ord Feature
Show Feature
length :: Feature -> Offset | Source
parse :: (Error e, MonadError e m) => ByteString -> m Feature | Source
unparse :: Feature -> ByteString | Source
parseWithFasta :: (Error e, MonadError e m) => ByteString -> m ([Feature], [ByteString]) | Source
attrByTag :: ByteString -> Feature -> [ByteString] | Source
ids :: Feature -> [ByteString] | Source
parentIds :: Feature -> [ByteString] | Source
contigLoc :: Feature -> ContigLoc | Source
loc :: Feature -> Loc | Source
seqLoc :: Feature -> SeqLoc | Source
name :: (Error e, MonadError e m) => Feature -> m SeqName | Source
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