## Uses of Class
org.biojava.bio.seq.db.IllegalIDException

Packages that use IllegalIDException
org.biojava.bio.program.das: Development client for the Distributed Annotation System.
org.biojava.bio.program.gff: GFF manipulation.
org.biojava.bio.program.ssbind: Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
org.biojava.bio.seq: Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.seq.db: Collections of biological sequence data.
org.biojava.bio.seq.db.biofetch: Client for the OBDA BioFetch protocol.
org.biojava.bio.seq.db.biosql: General purpose Sequence storage in a relational database.
org.biojava.bio.seq.db.flat: Support for OBDA flatfile databases.
org.biojava.bio.seq.distributed: Sequences and SequenceDBs which are composed from data taken from a number of data sources.

Uses of IllegalIDException in org.biojava.bio.program.das

Methods in org.biojava.bio.program.das that throw IllegalIDException
`Sequence` `DASSequenceDB.getSequence(java.lang.String id)`

Uses of IllegalIDException in org.biojava.bio.program.gff

Methods in org.biojava.bio.program.gff that throw IllegalIDException
`static SequenceDB` `GFFTools.annotateSequences(SequenceDB seqs, GFFEntrySet ents)` Annotates all sequences in a sequence DB with features from a GFF entry set.

Uses of IllegalIDException in org.biojava.bio.program.ssbind

Methods in org.biojava.bio.program.ssbind that throw IllegalIDException
`Sequence` `SimilarityPairBuilder.getAnnotatedQuerySeq(java.lang.String queryID)`
`Sequence` `SimilarityPairBuilder.getAnnotatedSubjectSeq(java.lang.String subjectID)`

Uses of IllegalIDException in org.biojava.bio.seq

Methods in org.biojava.bio.seq that throw IllegalIDException
`Feature` `RemoteFeature.Resolver.resolve(RemoteFeature rFeat)` Resolve rFeat.

Uses of IllegalIDException in org.biojava.bio.seq.db

Methods in org.biojava.bio.seq.db that throw IllegalIDException
`void` `EmblCDROMIndexStore.store(Index index)` `store` adds an `Index` to the store.
`Index` `EmblCDROMIndexStore.fetch(java.lang.String id)`
`Sequence` `DummySequenceDB.getSequence(java.lang.String id)`
`void` `DummySequenceDB.addSequence(Sequence seq)`
`void` `DummySequenceDB.removeSequence(java.lang.String id)`
`void` `TabIndexStore.store(Index indx)`
`Index` `TabIndexStore.fetch(java.lang.String id)`
`void` `IndexedSequenceDB.addFile(java.io.File seqFile)` Add sequences from a file to the sequence database.
`Sequence` `IndexedSequenceDB.getSequence(java.lang.String id)`
`Sequence` `SequenceDBLite.getSequence(java.lang.String id)` Retrieve a single sequence by its id.
`void` `SequenceDBLite.addSequence(Sequence seq)` Adds a sequence to the database.
`void` `SequenceDBLite.removeSequence(java.lang.String id)` Remove the sequence associated with an ID from the database.
`void` `IndexStore.store(Index indx)` Add the Index to the store.
`Index` `IndexStore.fetch(java.lang.String id)` Fetch an Index based upon an ID.
`Index` `BioIndex.fetch(java.lang.String id)`
`Sequence` `HashSequenceDB.getSequence(java.lang.String id)`

Uses of IllegalIDException in org.biojava.bio.seq.db.biofetch

Methods in org.biojava.bio.seq.db.biofetch that throw IllegalIDException
`Sequence` `BioFetchSequenceDB.getSequence(java.lang.String id)`

Uses of IllegalIDException in org.biojava.bio.seq.db.biosql

Methods in org.biojava.bio.seq.db.biosql that throw IllegalIDException
`void` `BioSQLSequenceDB.createDummySequence(java.lang.String id, Alphabet alphabet, int length)`
`void` `BioSQLSequenceDB.addSequence(Sequence seq)`
`Sequence` `BioSQLSequenceDB.getSequence(java.lang.String id)`
`void` `BioSQLSequenceDB.removeSequence(java.lang.String id)`

Uses of IllegalIDException in org.biojava.bio.seq.db.flat

Methods in org.biojava.bio.seq.db.flat that throw IllegalIDException
`Sequence` `FlatSequenceDB.getSequence(java.lang.String id)`

Uses of IllegalIDException in org.biojava.bio.seq.distributed

Methods in org.biojava.bio.seq.distributed that throw IllegalIDException
`Sequence` `DistributedSequenceDB.getSequence(java.lang.String id)`