## Uses of Package
org.biojava.bio.dist

Packages that use org.biojava.bio.dist
org.biojava.bio.dist: Probability distributions over Alphabets.
org.biojava.bio.dp: HMM and Dynamic Programming Algorithms.
org.biojava.bio.gui: Graphical interfaces for biojava objects.
org.biojava.bio.program.hmmer: Tools for working with profile Hidden Markov Models from the HMMer package.
org.biojava.bio.program.phred: Parser for Phred output

Classes in org.biojava.bio.dist used by org.biojava.bio.dist
AbstractDistribution An abstract implementation of Distribution.
Count An encapsulation of a count over the Symbols within an alphabet.
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.
Distribution.NullModelForwarder This listens to the null model distribution events and converts them into NULL_MODEL events.
DistributionFactory A thing that can make Distributions.
DistributionTrainer An object that can be used to train a distribution up.
DistributionTrainerContext A context within a group of DistributionTrainers can be trained together.
IgnoreCountsTrainer A distribution trainer that just ignores all counts.
OrderNDistribution Provides an N'th order distribution.
SimpleDistribution A simple implementation of a distribution, which works with any finite alphabet.

Classes in org.biojava.bio.dist used by org.biojava.bio.dp
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.
DistributionFactory A thing that can make Distributions.
DistributionTrainerContext A context within a group of DistributionTrainers can be trained together.
SimpleDistributionTrainerContext A no-frills implementation of DistributionTrainerContext.

Classes in org.biojava.bio.dist used by org.biojava.bio.gui
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.

Classes in org.biojava.bio.dist used by org.biojava.bio.program.hmmer
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.
DistributionFactory A thing that can make Distributions.

Classes in org.biojava.bio.dist used by org.biojava.bio.program.phred
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.