## Hierarchy For Package org.biojava.bio.alignment

Package Hierarchies:
  All Packages

## Class Hierarchy

- class java.lang.Object
  - class org.biojava.utils.AbstractChangeable (implements org.biojava.utils.Changeable)
    - class org.biojava.bio.symbol.AbstractSymbolList (implements org.biojava.bio.symbol.SymbolList)
      - class org.biojava.bio.alignment.AbstractULAlignment (implements org.biojava.bio.alignment.UnequalLengthAlignment)
        - class org.biojava.bio.alignment.FlexibleAlignment (implements org.biojava.bio.alignment.ARAlignment, org.biojava.bio.alignment.EditableAlignment)
      - class org.biojava.bio.alignment.AbstractULAlignment.SubULAlignment (implements org.biojava.bio.alignment.UnequalLengthAlignment)
  - class org.biojava.bio.alignment.AbstractULAlignment.LeftRightLocationComparator (implements java.util.Comparator)
  - class org.biojava.bio.alignment.SimpleAlignmentElement (implements org.biojava.bio.alignment.AlignmentElement)
  - class java.lang.Throwable (implements java.io.Serializable)
    - class java.lang.Exception
      - class java.lang.RuntimeException
        - class org.biojava.utils.NestedRuntimeException
          - class org.biojava.bio.BioRuntimeException
            - class org.biojava.bio.alignment.IllegalAlignmentEditException

## Interface Hierarchy

- interface org.biojava.bio.alignment.AlignmentElement
- interface org.biojava.utils.Changeable
  - interface org.biojava.bio.symbol.SymbolList
    - interface org.biojava.bio.symbol.Alignment
      - interface org.biojava.bio.alignment.ARAlignment
      - interface org.biojava.bio.alignment.UnequalLengthAlignment
- interface org.biojava.bio.alignment.EditableAlignment
- interface org.biojava.bio.alignment.QualitativeAlignment