## Hierarchy For Package org.biojava.bio.search

Package Hierarchies:
  All Packages

## Class Hierarchy

- class java.lang.Object
  - class org.biojava.utils.AbstractChangeable (implements org.biojava.utils.Changeable)
    - class org.biojava.bio.search.SequenceDBSearchHit (implements org.biojava.bio.Annotatable, org.biojava.bio.search.SeqSimilaritySearchHit)
    - class org.biojava.bio.search.SequenceDBSearchResult (implements org.biojava.bio.Annotatable, org.biojava.bio.search.SeqSimilaritySearchResult)
    - class org.biojava.bio.search.SequenceDBSearchSubHit (implements org.biojava.bio.search.SeqSimilaritySearchSubHit)
    - class org.biojava.bio.search.SimpleSeqSimilaritySearchHit (implements org.biojava.bio.search.SeqSimilaritySearchHit)
    - class org.biojava.bio.search.SimpleSeqSimilaritySearchResult (implements org.biojava.bio.search.SeqSimilaritySearchResult)
    - class org.biojava.bio.search.SimpleSeqSimilaritySearchSubHit (implements org.biojava.bio.search.SeqSimilaritySearchSubHit)
  - class org.biojava.bio.search.KnuthMorrisPrattSearch
  - class org.biojava.bio.search.SearchContentAdapter (implements org.biojava.bio.search.SearchContentHandler)
  - class org.biojava.bio.search.SearchContentFilter (implements org.biojava.bio.search.SearchContentHandler)
  - class org.biojava.bio.search.SeqSimilaritySearchHit.ByScoreComparator (implements java.util.Comparator)
  - class org.biojava.bio.search.SeqSimilaritySearchHit.BySubHitCountComparator (implements java.util.Comparator)
  - class org.biojava.bio.search.SeqSimilaritySearchSubHit.ByScoreComparator (implements java.util.Comparator)
  - class org.biojava.bio.search.SeqSimilaritySearchSubHit.BySubjectStartComparator (implements java.util.Comparator)

## Interface Hierarchy

- interface org.biojava.utils.Changeable
  - interface org.biojava.bio.Annotatable
    - interface org.biojava.bio.search.SeqSimilaritySearchHit
    - interface org.biojava.bio.search.SeqSimilaritySearchResult
    - interface org.biojava.bio.search.SeqSimilaritySearchSubHit
- interface org.biojava.bio.search.SearchContentHandler
  - interface org.biojava.bio.search.SearchBuilder
- interface org.biojava.bio.search.SeqSimilaritySearcher