                                  eiprscan



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Function

   Motif detection

Description

Algorithm

Usage

   Here is a sample session with eiprscan


% eiprscan -nocrc -goterms -iprlookup
Motif detection
Input sequence set: iprtest.seq
Applications to use
          all : all
  blastprodom : blastprodom
        coils : coils
       gene3d : gene3d
   hmmpanther : hmmpanther
       hmmpir : hmmpir
      hmmpfam : hmmpfam
     hmmsmart : hmmsmart
      hmmtigr : hmmtigr
   fprintscan : fprintscan
   scanregexp : scanregexp
  profilescan : profilescan
  superfamily : superfamily
          seg : seg
      signalp : signalp
        tmhmm : tmhmm
Application(s) to use [all]:
Output Formats
       raw : Raw
       txt : Text
      html : Html
       xml : Xml
    ebixml : EBIxml
       gff : GFF
Format to use [xml]: raw
EIPRSCAN program output file [iprtest.eiprscan]:
SUBMITTED-iprscan-20100115-12345678


   Go to the input files for this example
   Go to the output files for this example

Command line arguments

Motif detection
Version: EMBOSS:6.2.0

   Standard (Mandatory) qualifiers:
  [-sequence]          seqset     Sequence set filename and optional format,
                                  or reference (input USA)
   -appl               menu       [all] Application(s) to use (Values: all
                                  (all); blastprodom (blastprodom); coils
                                  (coils); gene3d (gene3d); hmmpanther
                                  (hmmpanther); hmmpir (hmmpir); hmmpfam
                                  (hmmpfam); hmmsmart (hmmsmart); hmmtigr
                                  (hmmtigr); fprintscan (fprintscan);
                                  scanregexp (scanregexp); profilescan
                                  (profilescan); superfamily (superfamily);
                                  seg (seg); signalp (signalp); tmhmm (tmhmm))
   -format             menu       [xml] Format to use (Values: raw (Raw); txt
                                  (Text); html (Html); xml (Xml); ebixml
                                  (EBIxml); gff (GFF))
  [-outfile]           outfile    [*.eiprscan] EIPRSCAN program output file

   Additional (Optional) qualifiers (* if not always prompted):
   -email              string     Submitter email address (Any string)
   -trtable            menu       [0] Genetic codes used for translation
                                  (Values: 0 (Standard); 1 (Standard (with
                                  alternative initiation codons)); 2
                                  (Vertebrate Mitochondrial); 3 (Yeast
                                  Mitochondrial); 4 (Mold, Protozoan,
                                  Coelenterate Mitochondrial and
                                  Mycoplasma/Spiroplasma); 5 (Invertebrate
                                  Mitochondrial); 6 (Ciliate Macronuclear and
                                  Dasycladacean); 9 (Echinoderm
                                  Mitochondrial); 10 (Euplotid Nuclear); 11
                                  (Bacterial); 12 (Alternative Yeast Nuclear);
                                  13 (Ascidian Mitochondrial); 14 (Flatworm
                                  Mitochondrial); 15 (Blepharisma
                                  Macronuclear); 16 (Chlorophycean
                                  Mitochondrial); 21 (Trematode
                                  Mitochondrial); 22 (Scenedesmus obliquus);
                                  23 (Thraustochytrium Mitochondrial))
   -trlen              integer    [1] Minimum size of Open Reading Frames
                                  (ORFs) in the translations. (Integer 1 or
                                  more)
   -iprlookup          boolean    [N] Turn on InterPro lookup for results
*  -goterms            boolean    [N] Show GO terms in InterPro lookup
   -[no]crc            boolean    [Y] Perform CRC64 check
   -altjobs            boolean    [N] Launch jobs alternately (chunk after
                                  chunk)

   Advanced (Unprompted) qualifiers: (none)
   Associated qualifiers:

   "-sequence" associated qualifiers
   -sbegin1            integer    Start of each sequence to be used
   -send1              integer    End of each sequence to be used
   -sreverse1          boolean    Reverse (if DNA)
   -sask1              boolean    Ask for begin/end/reverse
   -snucleotide1       boolean    Sequence is nucleotide
   -sprotein1          boolean    Sequence is protein
   -slower1            boolean    Make lower case
   -supper1            boolean    Make upper case
   -sformat1           string     Input sequence format
   -sdbname1           string     Database name
   -sid1               string     Entryname
   -ufo1               string     UFO features
   -fformat1           string     Features format
   -fopenfile1         string     Features file name

   "-outfile" associated qualifiers
   -odirectory2        string     Output directory

   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write first file to standard output
   -filter             boolean    Read first file from standard input, write
                                  first file to standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options and exit. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
   -version            boolean    Report version number and exit


Input file format

   eiprscan reads any normal sequence USAs.

  Input files for usage example

  File: iprtest.seq

>RS16_ECOLI
MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHW
VGQGATISDRVAALIKEVNKAA
>Q9RHD9
XPKLEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSN
PWEDFSSQFNKGDRISGSIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKG
DELETVILSVDPERERISLGIKQLEDDPFSNYASLHEKGSIVRGTVKEVDAKGAVISLGD
DIEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMK
ELRKQEVESAGPTTIGDLIRAQMENQG
>Y902_MYCTU Q10560 PROBABLE SENSOR-LIKE HISTIDINE KINASE RV0902C (EC 2.7.3.-).
MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFA
IPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTV
EIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLA
EQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSH
ELRTPLTAMRTNLEVLSTLDLPDDQRKEVLNDVIRTQSRIEATLSALERLAQGELSTSDD
HVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA
TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQ
LHGGTASLENSPLGGARLVLRLPGPS

Output file format

   eiprscan outputs a file in a format selected from the commandline
   options

  Output files for usage example

  File: iprtest.eiprscan

RS16_ECOLI      F94D07049A6D489D        82      BlastProDom     PD003791
RS16_BUCAI_P57474;      9       77      1e-19   T       07-Jan-2010     IPR00030
7       Ribosomal protein S16   Molecular Function: structural constituent of ri
bosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Co
mponent: ribosome (GO:0005840), Biological Process: translation (GO:0006412)
Q9RHD9  D44DAE8C544CB7C1        267     Coil    coil    coiled-coil     225
246     NA      ?       07-Jan-2010     NULL    NULL
RS16_ECOLI      F94D07049A6D489D        82      Gene3D  G3DSA:3.30.1320.10
no description  1       77      1.7e-25 T       07-Jan-2010     IPR000307
Ribosomal protein S16   Molecular Function: structural constituent of ribosome (
GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component:
 ribosome (GO:0005840), Biological Process: translation (GO:0006412)
Q9RHD9  D44DAE8C544CB7C1        267     Gene3D  G3DSA:2.40.50.140       no descr
iption  3       57      4.5e-10 T       07-Jan-2010     IPR012340       Nucleic
acid-binding, OB-fold
Q9RHD9  D44DAE8C544CB7C1        267     Gene3D  G3DSA:2.40.50.140       no descr
iption  67      144     1.3e-16 T       07-Jan-2010     IPR012340       Nucleic
acid-binding, OB-fold
Q9RHD9  D44DAE8C544CB7C1        267     Gene3D  G3DSA:2.40.50.140       no descr
iption  156     230     9.2e-17 T       07-Jan-2010     IPR012340       Nucleic
acid-binding, OB-fold
Y902_MYCTU      CD84A335CCFFE6D7        446     Gene3D  G3DSA:3.30.565.10
no description  301     443     6.3e-25 T       07-Jan-2010     IPR003594
ATP-binding region, ATPase-like Molecular Function: ATP binding (GO:0005524)
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMPanther      PTHR23283:SF23
SENSORY TRANSDUCTION HISTIDINE KINASE (BACTERIAL SENSOR PROTEIN)        6
57      1.9e-48 T       07-Jan-2010     NULL    NULL
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMPanther      PTHR23283:SF23
SENSORY TRANSDUCTION HISTIDINE KINASE (BACTERIAL SENSOR PROTEIN)        151
443     1.9e-48 T       07-Jan-2010     NULL    NULL
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMPanther      PTHR23283
SENSOR HISTIDINE KINASE-RELATED 6       57      1.9e-48 T       07-Jan-2010
NULL    NULL
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMPanther      PTHR23283
SENSOR HISTIDINE KINASE-RELATED 151     443     1.9e-48 T       07-Jan-2010
NULL    NULL
RS16_ECOLI      F94D07049A6D489D        82      HMMPanther      PTHR12919
30S RIBOSOMAL PROTEIN S16       1       78      4.2e-36 T       07-Jan-2010
IPR000307       Ribosomal protein S16   Molecular Function: structural constitue
nt of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cel
lular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006
412)
Q9RHD9  D44DAE8C544CB7C1        267     HMMPanther      PTHR23270       PROGRAMM
ED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5)     72      239
2.6e-09 T       07-Jan-2010     NULL    NULL
RS16_ECOLI      F94D07049A6D489D        82      HMMPfam PF00886 Ribosomal_S16
8       68      1.5e-35 T       07-Jan-2010     IPR000307       Ribosomal protei
n S16   Molecular Function: structural constituent of ribosome (GO:0003735), Cel
lular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:00
05840), Biological Process: translation (GO:0006412)
Q9RHD9  D44DAE8C544CB7C1        267     HMMPfam PF00575 S1      1       55
1.9e-08 T       07-Jan-2010     IPR003029       S1, RNA binding Molecular Functi
on: RNA binding (GO:0003723)
Q9RHD9  D44DAE8C544CB7C1        267     HMMPfam PF00575 S1      68      142
2.2e-21 T       07-Jan-2010     IPR003029       S1, RNA binding Molecular Functi
on: RNA binding (GO:0003723)
Q9RHD9  D44DAE8C544CB7C1        267     HMMPfam PF00575 S1      155     228
9.7e-22 T       07-Jan-2010     IPR003029       S1, RNA binding Molecular Functi
on: RNA binding (GO:0003723)
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMPfam PF00672 HAMP    151
219     4.7e-11 T       07-Jan-2010     IPR003660       Signal transduction hist
idine kinase, HAMP region       Molecular Function: signal transducer activity (
GO:0004871), Biological Process: signal transduction (GO:0007165), Cellular Comp
onent: membrane (GO:0016020)
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMPfam PF00512 HisKA   230
296     1.3e-13 T       07-Jan-2010     IPR003661       Signal transduction hist
idine kinase, subgroup 1, dimerisation and phosphoacceptor region       Molecula
r Function: two-component sensor activity (GO:0000155), Biological Process: sign
al transduction (GO:0007165), Cellular Component: membrane (GO:0016020)
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMPfam PF02518 HATPase_c
338     445     3.4e-29 T       07-Jan-2010     IPR003594       ATP-binding regi
on, ATPase-like Molecular Function: ATP binding (GO:0005524)
Q9RHD9  D44DAE8C544CB7C1        267     HMMSmart        SM00316 no description
3       55      1.2e-06 T       07-Jan-2010     IPR003029       S1, RNA binding
Molecular Function: RNA binding (GO:0003723)
Q9RHD9  D44DAE8C544CB7C1        267     HMMSmart        SM00316 no description
70      142     1.4e-19 T       07-Jan-2010     IPR003029       S1, RNA binding
Molecular Function: RNA binding (GO:0003723)
Q9RHD9  D44DAE8C544CB7C1        267     HMMSmart        SM00316 no description
157     228     2.6e-21 T       07-Jan-2010     IPR003029       S1, RNA binding
Molecular Function: RNA binding (GO:0003723)
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMSmart        SM00304 no descr
iption  170     222     3.1e-06 T       07-Jan-2010     IPR003660       Signal t
ransduction histidine kinase, HAMP region       Molecular Function: signal trans
ducer activity (GO:0004871), Biological Process: signal transduction (GO:0007165
), Cellular Component: membrane (GO:0016020)
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMSmart        SM00388 no descr
iption  230     296     2.4e-12 T       07-Jan-2010     IPR003661       Signal t
ransduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor regio
n       Molecular Function: two-component sensor activity (GO:0000155), Biologic
al Process: signal transduction (GO:0007165), Cellular Component: membrane (GO:0
016020)
Y902_MYCTU      CD84A335CCFFE6D7        446     HMMSmart        SM00387 no descr
iption  338     446     5e-24   T       07-Jan-2010     IPR003594       ATP-bind
ing region, ATPase-like Molecular Function: ATP binding (GO:0005524)
RS16_ECOLI      F94D07049A6D489D        82      HMMTigr TIGR00002       S16: rib
osomal protein S16      2       81      1.8e-32 T       07-Jan-2010     IPR00030
7       Ribosomal protein S16   Molecular Function: structural constituent of ri
bosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Co
mponent: ribosome (GO:0005840), Biological Process: translation (GO:0006412)
Q9RHD9  D44DAE8C544CB7C1        267     FPrintScan      PR00681 RIBOSOMALS1
6       27      7.9e-17 T       07-Jan-2010     IPR000110       Ribosomal protei
n S1    Molecular Function: RNA binding (GO:0003723), Molecular Function: struct
ural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005
840), Biological Process: translation (GO:0006412)
Q9RHD9  D44DAE8C544CB7C1        267     FPrintScan      PR00681 RIBOSOMALS1
85      104     7.9e-17 T       07-Jan-2010     IPR000110       Ribosomal protei
n S1    Molecular Function: RNA binding (GO:0003723), Molecular Function: struct
ural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005
840), Biological Process: translation (GO:0006412)
Q9RHD9  D44DAE8C544CB7C1        267     FPrintScan      PR00681 RIBOSOMALS1
125     143     7.9e-17 T       07-Jan-2010     IPR000110       Ribosomal protei
n S1    Molecular Function: RNA binding (GO:0003723), Molecular Function: struct
ural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005
840), Biological Process: translation (GO:0006412)
Y902_MYCTU      CD84A335CCFFE6D7        446     FPrintScan      PR00344 BCTRLSEN
SOR     374     388     1.1e-11 T       07-Jan-2010     IPR004358       Signal t
ransduction histidine kinase-related protein, C-terminal        Biological Proce
ss: phosphorylation (GO:0016310), Molecular Function: transferase activity, tran
sferring phosphorus-containing groups (GO:0016772)
Y902_MYCTU      CD84A335CCFFE6D7        446     FPrintScan      PR00344 BCTRLSEN
SOR     392     402     1.1e-11 T       07-Jan-2010     IPR004358       Signal t
ransduction histidine kinase-related protein, C-terminal        Biological Proce
ss: phosphorylation (GO:0016310), Molecular Function: transferase activity, tran
sferring phosphorus-containing groups (GO:0016772)
Y902_MYCTU      CD84A335CCFFE6D7        446     FPrintScan      PR00344 BCTRLSEN
SOR     406     424     1.1e-11 T       07-Jan-2010     IPR004358       Signal t
ransduction histidine kinase-related protein, C-terminal        Biological Proce
ss: phosphorylation (GO:0016310), Molecular Function: transferase activity, tran
sferring phosphorus-containing groups (GO:0016772)
Y902_MYCTU      CD84A335CCFFE6D7        446     FPrintScan      PR00344 BCTRLSEN
SOR     430     443     1.1e-11 T       07-Jan-2010     IPR004358       Signal t
ransduction histidine kinase-related protein, C-terminal        Biological Proce
ss: phosphorylation (GO:0016310), Molecular Function: transferase activity, tran
sferring phosphorus-containing groups (GO:0016772)
RS16_ECOLI      F94D07049A6D489D        82      ScanRegExp      PS00732 RIBOSOMA
L_S16   2       11      8e-5    T       07-Jan-2010     IPR000307       Ribosoma
l protein S16   Molecular Function: structural constituent of ribosome (GO:00037
35), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosom
e (GO:0005840), Biological Process: translation (GO:0006412)
Q9RHD9  D44DAE8C544CB7C1        267     ProfileScan     PS50126 S1      1
55      14.869  T       07-Jan-2010     IPR003029       S1, RNA binding Molecula
r Function: RNA binding (GO:0003723)
Q9RHD9  D44DAE8C544CB7C1        267     ProfileScan     PS50126 S1      72
142     20.809  T       07-Jan-2010     IPR003029       S1, RNA binding Molecula
r Function: RNA binding (GO:0003723)
Q9RHD9  D44DAE8C544CB7C1        267     ProfileScan     PS50126 S1      159
228     22.541  T       07-Jan-2010     IPR003029       S1, RNA binding Molecula
r Function: RNA binding (GO:0003723)
Y902_MYCTU      CD84A335CCFFE6D7        446     ProfileScan     PS50885 HAMP
170     222     7.777   T       07-Jan-2010     IPR003660       Signal transduct
ion histidine kinase, HAMP region       Molecular Function: signal transducer ac
tivity (GO:0004871), Biological Process: signal transduction (GO:0007165), Cellu
lar Component: membrane (GO:0016020)
Y902_MYCTU      CD84A335CCFFE6D7        446     ProfileScan     PS50109 HIS_KIN
237     446     34.449  T       07-Jan-2010     IPR005467       Signal transduct
ion histidine kinase, core      Molecular Function: two-component sensor activit
y (GO:0000155), Molecular Function: protein histidine kinase activity (GO:000467
3), Biological Process: signal transduction (GO:0007165), Biological Process: pe
ptidyl-histidine phosphorylation (GO:0018106)
RS16_ECOLI      F94D07049A6D489D        82      superfamily     SSF54565
Ribosomal protein S16   1       79      3.1e-27 T       07-Jan-2010     IPR00030
7       Ribosomal protein S16   Molecular Function: structural constituent of ri
bosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Co
mponent: ribosome (GO:0005840), Biological Process: translation (GO:0006412)
Q9RHD9  D44DAE8C544CB7C1        267     superfamily     SSF50249        Nucleic
acid-binding proteins   67      220     7.6e-41 T       07-Jan-2010     IPR01602
7       Nucleic acid-binding, OB-fold-like
Q9RHD9  D44DAE8C544CB7C1        267     superfamily     SSF50249        Nucleic
acid-binding proteins   3       61      1.4e-14 T       07-Jan-2010     IPR01602
7       Nucleic acid-binding, OB-fold-like
Y902_MYCTU      CD84A335CCFFE6D7        446     superfamily     SSF55874
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase  303
444     8e-31   T       07-Jan-2010     IPR003594       ATP-binding region, ATPa
se-like Molecular Function: ATP binding (GO:0005524)
Y902_MYCTU      CD84A335CCFFE6D7        446     superfamily     SSF47384
Homodimeric domain of signal transducing histidine kinase       220     292
4.8e-12 T       07-Jan-2010     IPR009082       Signal transduction histidine ki
nase, homodimeric       Molecular Function: signal transducer activity (GO:00048
71), Biological Process: signal transduction (GO:0007165)
Q9RHD9  D44DAE8C544CB7C1        267     Seg     seg     seg     29      40
NA      ?       07-Jan-2010     NULL    NULL
Q9RHD9  D44DAE8C544CB7C1        267     Seg     seg     seg     84      98
NA      ?       07-Jan-2010     NULL    NULL
Q9RHD9  D44DAE8C544CB7C1        267     Seg     seg     seg     222     237
NA      ?       07-Jan-2010     NULL    NULL
Y902_MYCTU      CD84A335CCFFE6D7        446     Seg     seg     seg     44
55      NA      ?       07-Jan-2010     NULL    NULL
Y902_MYCTU      CD84A335CCFFE6D7        446     Seg     seg     seg     108
120     NA      ?       07-Jan-2010     NULL    NULL
Y902_MYCTU      CD84A335CCFFE6D7        446     Seg     seg     seg     160
173     NA      ?       07-Jan-2010     NULL    NULL
Y902_MYCTU      CD84A335CCFFE6D7        446     Seg     seg     seg     308
319     NA      ?       07-Jan-2010     NULL    NULL
Y902_MYCTU      CD84A335CCFFE6D7        446     Seg     seg     seg     400
424     NA      ?       07-Jan-2010     NULL    NULL

Data files

   None other rthan the databases configured for the native iprscan
   application.

Notes

   None.

References

   None.

Warnings

   None.

Diagnostic Error Messages

   None.

Exit status

   It always exits with status 0.

Known bugs

   None.

See also

   Program name     Description
   antigenic        Finds antigenic sites in proteins
   digest           Reports on protein proteolytic enzyme or reagent cleavage sites
   echlorop         Reports presence of chloroplast transit peptides
   elipop           Prediction of lipoproteins
   emast            Motif detection
   ememe            Multiple EM for Motif Elicitation
   ememetext        Multiple EM for Motif Elicitation. Text file only
   enetnglyc        Reports N-glycosylation sites in human proteins
   enetoglyc        Reports mucin type GalNAc O-glycosylation sites in mammalian
                    proteins
   enetphos         Reports ser, thr and tyr phosphorylation sites in eukaryotic
                    proteins
   epestfind        Finds PEST motifs as potential proteolytic cleavage sites
   eprop            Reports propeptide cleavage sites in proteins
   esignalp         Reports protein signal cleavage sites
   etmhmm           Reports transmembrane helices
   eyinoyang        Reports O-(beta)-GlcNAc attachment sites
   fuzzpro          Search for patterns in protein sequences
   fuzztran         Search for patterns in protein sequences (translated)
   helixturnhelix   Identify nucleic acid-binding motifs in protein
                    sequences
   oddcomp          Identify proteins with specified sequence word composition
   omeme            Motif detection
   patmatdb         Searches protein sequences with a sequence motif
   patmatmotifs     Scan a protein sequence with motifs from the PROSITE
                    database
   pepcoil          Predicts coiled coil regions in protein sequences
   preg             Regular expression search of protein sequence(s)
   pscan            Scans protein sequence(s) with fingerprints from the PRINTS
                    database
   sigcleave        Reports on signal cleavage sites in a protein sequence

Author(s)

   This program is an EMBOSS wrapper for the InterProSCAN application
   "iprscan"

   The original iprscan application must be installed and configured to
   use this wrapper.

   Although we take every care to ensure that the results of the EMBOSS
   version are identical to those from the original package, we recommend
   that you check your inputs give the same results in both versions
   before publication.

   Please report all bugs in the EMBOSS version to the EMBOSS bug team,
   not to the original author.

History

Target users

   This program is intended to be used by everyone and everything, from
   naive users to embedded scripts.

Comments

   None
