# DOMALIGN Applications

The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

### Applications in the current domalign release

Program name | Description
--- | ---
allversusall | Sequence similarity data from all-versus-all comparison
domainalign | Generate alignments (DAF file) for nodes in a DCF file
domainrep | Reorder DCF file to identify representative structures
seqalign | Extend alignments (DAF file) with sequences (DHF file)