Bio::TreeIO::nhx(3)

NAME
Bio::TreeIO::nhx - TreeIO implementation for parsing
    Newick/New Hampshire eXtendend (NHX) format.

SYNOPSIS
  # do not use this module directly
  use Bio::TreeIO;
  my $treeio = Bio::TreeIO->new(-format => 'nhx', -file => 'tree.dnd');
  my $tree = $treeio->next_tree;

DESCRIPTION
This module handles parsing and writing of Newick/New Hampshire eXtended (NHX) format.

FEEDBACK

  Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

  Support
Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

  Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted viax the web:

  http://bugzilla.open-bio.org/

AUTHOR - Aaron Mackey
Email amackey-at-virginia.edu

CONTRIBUTORS
Email jason-at-bioperl-dot-org

APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

  next_tree
 Title   : next_tree
 Usage   : my $tree = $treeio->next_tree
 Function: Gets the next tree in the stream
 Returns : Bio::Tree::TreeI
 Args    : none

  write_tree
 Title   : write_tree
 Usage   : $treeio->write_tree($tree);
 Function: Write a tree out to data stream in nhx format
 Returns : none
 Args    : Bio::Tree::TreeI object