fastout

Index

! | Bio.Sequence.SeqData, Bio.Sequence
? | Bio.Sequence.SeqData
Ala | Bio.Sequence.SeqData, Bio.Sequence
Amino | Bio.Sequence.SeqData, Bio.Sequence
appendHeader | Bio.Sequence.SeqData, Bio.Sequence
Arg | Bio.Sequence.SeqData, Bio.Sequence
Asn | Bio.Sequence.SeqData, Bio.Sequence
Asp | Bio.Sequence.SeqData, Bio.Sequence
Asx | Bio.Sequence.SeqData, Bio.Sequence
b36 | Bio.Sequence.SFF_name
bases | Bio.Sequence.SFF
baseToFlowPos | Bio.Sequence.SFF
castSeq | Bio.Sequence.SeqData
castToAmino | Bio.Sequence.SeqData, Bio.Sequence
castToNuc | Bio.Sequence.SeqData, Bio.Sequence
clip_adapter_left | Bio.Sequence.SFF
clip_adapter_right | Bio.Sequence.SFF
clip_qual_left | Bio.Sequence.SFF
clip_qual_right | Bio.Sequence.SFF
CommonHeader |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
compact | Bio.Sequence.HashWord
compl | Bio.Sequence.SeqData, Bio.Sequence
complement | Bio.Sequence.HashWord
contigous | Bio.Sequence.HashWord, Bio.Sequence
convert | Bio.Sequence.SFF
countSeqs | Bio.Sequence.Fasta
cumulative_index | Bio.Sequence.SFF
Cys | Bio.Sequence.SeqData, Bio.Sequence
date | Bio.Sequence.SFF_name, Bio.Sequence.SFF
decCh | Bio.Sequence.SFF_name
decode2Bit | Bio.Sequence.TwoBit, Bio.Sequence
decode36 | Bio.Sequence.SFF_name
decodeDate | Bio.Sequence.SFF_name
decodeLocation | Bio.Sequence.SFF_name
decodeReadName | Bio.Sequence.SFF_name, Bio.Sequence.SFF
defragSeq | Bio.Sequence.SeqData, Bio.Sequence
divMods | Bio.Sequence.SFF_name
encode2Bit | Bio.Sequence.TwoBit
encode36 | Bio.Sequence.SFF_name
encodeDate | Bio.Sequence.SFF_name
encodeLocation | Bio.Sequence.SFF_name
encodeReadName | Bio.Sequence.SFF_name, Bio.Sequence.SFF
encodeRegion | Bio.Sequence.SFF_name
entropy | Bio.Sequence.Entropy, Bio.Sequence
Flow | Bio.Sequence.SFF
flow | Bio.Sequence.SFF
flowgram | Bio.Sequence.SFF
flowgram_fmt | Bio.Sequence.SFF
flowToBasePos | Bio.Sequence.SFF
flow_data | Bio.Sequence.SFF
flow_index | Bio.Sequence.SFF
flow_length | Bio.Sequence.SFF
fromIUPAC | Bio.Sequence.SeqData, Bio.Sequence
fromStr | Bio.Sequence.SeqData, Bio.Sequence
gapped | Bio.Sequence.HashWord
genkeys | Bio.Sequence.HashWord
Gln | Bio.Sequence.SeqData, Bio.Sequence
Glu | Bio.Sequence.SeqData, Bio.Sequence
Glx | Bio.Sequence.SeqData, Bio.Sequence
Gly | Bio.Sequence.SeqData, Bio.Sequence
hash | Bio.Sequence.HashWord, Bio.Sequence
hashes | Bio.Sequence.HashWord, Bio.Sequence
HashF | Bio.Sequence.HashWord, Bio.Sequence
hasqual | Bio.Sequence.SeqData
HF | Bio.Sequence.HashWord, Bio.Sequence
His | Bio.Sequence.SeqData, Bio.Sequence
hRead2Bit | Bio.Sequence.TwoBit, Bio.Sequence
hReadFasta | Bio.Sequence.Fasta, Bio.Sequence
hReadFastQ | Bio.Sequence.FastQ, Bio.Sequence
hReadIllumina | Bio.Sequence.FastQ, Bio.Sequence
hReadPhd | Bio.Sequence.Phd, Bio.Sequence
hReadSangerQ | Bio.Sequence.FastQ, Bio.Sequence
hWrite2Bit | Bio.Sequence.TwoBit
hWriteFasta | Bio.Sequence.Fasta, Bio.Sequence
hWriteFastaQual | Bio.Sequence.Fasta, Bio.Sequence
hWriteFastQ | Bio.Sequence.FastQ, Bio.Sequence
hWriteIllumina | Bio.Sequence.FastQ, Bio.Sequence
hWriteQual | Bio.Sequence.Fasta, Bio.Sequence
hWriteSangerQ | Bio.Sequence.FastQ, Bio.Sequence
Ile | Bio.Sequence.SeqData, Bio.Sequence
Index | Bio.Sequence.SFF
index_length | Bio.Sequence.SFF
index_offset | Bio.Sequence.SFF
isN | Bio.Sequence.HashWord
k2n | Bio.Sequence.HashWord
k2n' | Bio.Sequence.HashWord
key | Bio.Sequence.SFF
key_length | Bio.Sequence.SFF
ksort | Bio.Sequence.HashWord, Bio.Sequence
KWords | Bio.Sequence.Entropy, Bio.Sequence
kwords | Bio.Sequence.Entropy, Bio.Sequence
Leu | Bio.Sequence.SeqData, Bio.Sequence
Lys | Bio.Sequence.SeqData, Bio.Sequence
main | Main
masked_bases | Bio.Sequence.SFF
Met | Bio.Sequence.SeqData, Bio.Sequence
mkSeqs | Bio.Sequence.Fasta
n2i' | Bio.Sequence.HashWord
n2k | Bio.Sequence.HashWord
name_length | Bio.Sequence.SFF
Nuc | Bio.Sequence.SeqData, Bio.Sequence
num_bases | Bio.Sequence.SFF
num_reads | Bio.Sequence.SFF
Offset | Bio.Sequence.SeqData, Bio.Sequence
packFlows | Bio.Sequence.SFF
parse | Bio.Sequence.FastQ
Phe | Bio.Sequence.SeqData, Bio.Sequence
Pro | Bio.Sequence.SeqData, Bio.Sequence
putSeqLn | Bio.Sequence.SeqData
Qual | Bio.Sequence.SeqData, Bio.Sequence.Fasta, Bio.Sequence.SFF, Bio.Sequence
QualData | Bio.Sequence.SeqData, Bio.Sequence.SFF, Bio.Sequence
quality | Bio.Sequence.SFF
rbToSequence | Bio.Sequence.SFF
rcontig | Bio.Sequence.HashWord, Bio.Sequence
rcpacked | Bio.Sequence.HashWord, Bio.Sequence
read2Bit | Bio.Sequence.TwoBit, Bio.Sequence
ReadBlock |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
readFasta | Bio.Sequence.Fasta, Bio.Sequence
readFastaQual | Bio.Sequence.Fasta, Bio.Sequence
readFastQ | Bio.Sequence.FastQ, Bio.Sequence
ReadHeader |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
readIllumina | Bio.Sequence.FastQ, Bio.Sequence
ReadName |
1 (Type/Class) | Bio.Sequence.SFF_name, Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF_name, Bio.Sequence.SFF
readNuc | Bio.Sequence
readPhd | Bio.Sequence.Phd, Bio.Sequence
readProt | Bio.Sequence
readQual | Bio.Sequence.Fasta, Bio.Sequence
readSangerQ | Bio.Sequence.FastQ, Bio.Sequence
readSFF | Bio.Sequence.SFF
read_header | Bio.Sequence.SFF
read_name | Bio.Sequence.SFF
recoverSFF | Bio.Sequence.SFF
region | Bio.Sequence.SFF_name, Bio.Sequence.SFF
revcompl | Bio.Sequence.SeqData, Bio.Sequence
revcompl' | Bio.Sequence.SeqData, Bio.Sequence
Seq | Bio.Sequence.SeqData, Bio.Sequence
SeqData | Bio.Sequence.SeqData, Bio.Sequence.SFF, Bio.Sequence
seqdata | Bio.Sequence.SeqData, Bio.Sequence
seqheader | Bio.Sequence.SeqData, Bio.Sequence
seqlabel | Bio.Sequence.SeqData, Bio.Sequence
seqlength | Bio.Sequence.SeqData, Bio.Sequence
seqmap | Bio.Sequence.SeqData, Bio.Sequence
seqqual | Bio.Sequence.SeqData, Bio.Sequence
seqToStr | Bio.Sequence.SeqData
Sequence | Bio.Sequence.SeqData, Bio.Sequence
Ser | Bio.Sequence.SeqData, Bio.Sequence
setHeader | Bio.Sequence.SeqData, Bio.Sequence
SFF |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
sffToSequence | Bio.Sequence.SFF
Shape | Bio.Sequence.HashWord
STP | Bio.Sequence.SeqData, Bio.Sequence
test | Bio.Sequence.SFF
Thr | Bio.Sequence.SeqData, Bio.Sequence
time | Bio.Sequence.SFF_name, Bio.Sequence.SFF
toIUPAC | Bio.Sequence.SeqData, Bio.Sequence
toStr | Bio.Sequence.SeqData, Bio.Sequence
translate | Bio.Sequence.SeqData, Bio.Sequence
trim | Bio.Sequence.SFF
trimFlows | Bio.Sequence.SFF
trimFromTo | Bio.Sequence.SFF
trimKey | Bio.Sequence.SFF
Trp | Bio.Sequence.SeqData, Bio.Sequence
Tyr | Bio.Sequence.SeqData, Bio.Sequence
Unknown | Bio.Sequence.SeqData, Bio.Sequence
unpackFlows | Bio.Sequence.SFF
unparse | Bio.Sequence.FastQ
unval | Bio.Sequence.HashWord
Val | Bio.Sequence.SeqData, Bio.Sequence
val | Bio.Sequence.HashWord
write2Bit | Bio.Sequence.TwoBit
writeFasta | Bio.Sequence.Fasta, Bio.Sequence
writeFastaQual | Bio.Sequence.Fasta, Bio.Sequence
writeFastQ | Bio.Sequence.FastQ, Bio.Sequence
writeIllumina | Bio.Sequence.FastQ, Bio.Sequence
writeQual | Bio.Sequence.Fasta, Bio.Sequence
writeSangerQ | Bio.Sequence.FastQ, Bio.Sequence
writeSFF | Bio.Sequence.SFF
writeSFF' | Bio.Sequence.SFF
Xaa | Bio.Sequence.SeqData, Bio.Sequence
Xle | Bio.Sequence.SeqData, Bio.Sequence
x_loc | Bio.Sequence.SFF_name, Bio.Sequence.SFF
y_loc | Bio.Sequence.SFF_name, Bio.Sequence.SFF