frename

Index

! | Bio.Sequence.SeqData
? | Bio.Sequence.SeqData
Ala | Bio.Sequence.SeqData
Amino | Bio.Sequence.SeqData
appendHeader | Bio.Sequence.SeqData
Arg | Bio.Sequence.SeqData
Asn | Bio.Sequence.SeqData
Asp | Bio.Sequence.SeqData
Asx | Bio.Sequence.SeqData
b36 | Bio.Sequence.SFF_name
bases | Bio.Sequence.SFF
baseToFlowPos | Bio.Sequence.SFF
castSeq | Bio.Sequence.SeqData
castToAmino | Bio.Sequence.SeqData
castToNuc | Bio.Sequence.SeqData
clip_adapter_left | Bio.Sequence.SFF
clip_adapter_right | Bio.Sequence.SFF
clip_qual_left | Bio.Sequence.SFF
clip_qual_right | Bio.Sequence.SFF
CommonHeader |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
compl | Bio.Sequence.SeqData
convert | Bio.Sequence.SFF
cumulative_index | Bio.Sequence.SFF
Cys | Bio.Sequence.SeqData
date | Bio.Sequence.SFF_name, Bio.Sequence.SFF
decCh | Bio.Sequence.SFF_name
decode36 | Bio.Sequence.SFF_name
decodeDate | Bio.Sequence.SFF_name
decodeLocation | Bio.Sequence.SFF_name
decodeReadName | Bio.Sequence.SFF_name, Bio.Sequence.SFF
defragSeq | Bio.Sequence.SeqData
divMods | Bio.Sequence.SFF_name
encode36 | Bio.Sequence.SFF_name
encodeDate | Bio.Sequence.SFF_name
encodeLocation | Bio.Sequence.SFF_name
encodeReadName | Bio.Sequence.SFF_name, Bio.Sequence.SFF
encodeRegion | Bio.Sequence.SFF_name
Flow | Bio.Sequence.SFF
flow | Bio.Sequence.SFF
flowgram | Bio.Sequence.SFF
flowgram_fmt | Bio.Sequence.SFF
flowToBasePos | Bio.Sequence.SFF
flow_data | Bio.Sequence.SFF
flow_index | Bio.Sequence.SFF
flow_length | Bio.Sequence.SFF
fromIUPAC | Bio.Sequence.SeqData
fromStr | Bio.Sequence.SeqData
Gln | Bio.Sequence.SeqData
Glu | Bio.Sequence.SeqData
Glx | Bio.Sequence.SeqData
Gly | Bio.Sequence.SeqData
hasqual | Bio.Sequence.SeqData
His | Bio.Sequence.SeqData
Ile | Bio.Sequence.SeqData
Index | Bio.Sequence.SFF
index_length | Bio.Sequence.SFF
index_offset | Bio.Sequence.SFF
key | Bio.Sequence.SFF
key_length | Bio.Sequence.SFF
Leu | Bio.Sequence.SeqData
Lys | Bio.Sequence.SeqData
main | Main
masked_bases | Bio.Sequence.SFF
Met | Bio.Sequence.SeqData
name_length | Bio.Sequence.SFF
Nuc | Bio.Sequence.SeqData
num_bases | Bio.Sequence.SFF
num_reads | Bio.Sequence.SFF
Offset | Bio.Sequence.SeqData
packFlows | Bio.Sequence.SFF
Phe | Bio.Sequence.SeqData
Pro | Bio.Sequence.SeqData
putSeqLn | Bio.Sequence.SeqData
Qual | Bio.Sequence.SeqData, Bio.Sequence.SFF
QualData | Bio.Sequence.SeqData, Bio.Sequence.SFF
quality | Bio.Sequence.SFF
rbToSequence | Bio.Sequence.SFF
ReadBlock |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
ReadHeader |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
ReadName |
1 (Type/Class) | Bio.Sequence.SFF_name, Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF_name, Bio.Sequence.SFF
readSFF | Bio.Sequence.SFF
read_header | Bio.Sequence.SFF
read_name | Bio.Sequence.SFF
recoverSFF | Bio.Sequence.SFF
region | Bio.Sequence.SFF_name, Bio.Sequence.SFF
renameSFFs | Main
revcompl | Bio.Sequence.SeqData
revcompl' | Bio.Sequence.SeqData
Seq | Bio.Sequence.SeqData
SeqData | Bio.Sequence.SeqData, Bio.Sequence.SFF
seqdata | Bio.Sequence.SeqData
seqheader | Bio.Sequence.SeqData
seqlabel | Bio.Sequence.SeqData
seqlength | Bio.Sequence.SeqData
seqmap | Bio.Sequence.SeqData
seqqual | Bio.Sequence.SeqData
seqToStr | Bio.Sequence.SeqData
Sequence | Bio.Sequence.SeqData
Ser | Bio.Sequence.SeqData
setHeader | Bio.Sequence.SeqData
SFF |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
sffToSequence | Bio.Sequence.SFF
STP | Bio.Sequence.SeqData
test | Bio.Sequence.SFF
Thr | Bio.Sequence.SeqData
time | Bio.Sequence.SFF_name, Bio.Sequence.SFF
toIUPAC | Bio.Sequence.SeqData
toStr | Bio.Sequence.SeqData
translate | Bio.Sequence.SeqData
trim | Bio.Sequence.SFF
trimFlows | Bio.Sequence.SFF
trimFromTo | Bio.Sequence.SFF
trimKey | Bio.Sequence.SFF
Trp | Bio.Sequence.SeqData
Tyr | Bio.Sequence.SeqData
Unknown | Bio.Sequence.SeqData
unpackFlows | Bio.Sequence.SFF
Val | Bio.Sequence.SeqData
writeSFF | Bio.Sequence.SFF
writeSFF' | Bio.Sequence.SFF
Xaa | Bio.Sequence.SeqData
Xle | Bio.Sequence.SeqData
x_loc | Bio.Sequence.SFF_name, Bio.Sequence.SFF
y_loc | Bio.Sequence.SFF_name, Bio.Sequence.SFF