sites.S(1)		      Grass User's Manual		    sites.S(1)



NNAAMMEE
       ssiitteess..SS	- Description of the GRASS _s_._m_e_n_u "S" interface option.

DDEESSCCRRIIPPTTIIOONN
       This  describes	the  GRASS  _s_._m_e_n_u  "S"  statistical package interface
       option.	See also the manual entry for _s_._m_e_n_u.

SSPPEECCIIAALL AADDJJUUSSTTMMEENNTT
       Due to the fact that "S" references all subscripts  beginning  with  1,
       and  the GIS data begins with 0, it was necessary to add 1 to the cate-
       gory numbers.  Therefore, category value 0 ("no data") becomes category
       value 1, category 1 becomes category 2, etc.

SS DDAATTAA SSTTRRUUCCTTUURREESS
       Below are descriptions of the data structures created by the interface.
       As a general comment, within "S", simply typing the data structure name
       will  display the values contained in the structure.  You may also find
       it interesting to display the data structures using  the  "S"  function
       _d_p_u_t_(_).

       ccaatt..hhiissttoo,, ((ccaatt..##..hhiissttoo))

       This structure contains the histogram for the
	      categories in each map layer.  The histogram contains the number
	      of cells of each category which occur in the  user's  geographic
	      region (see wind.n, et al., below).  It is a 2-dimensional inte-
	      ger array (matrix).  The	first  subscript  references  the  map
	      layer.  The second subscript references the category value.

       Examples:
	      cat.histo[2,5]  is  the  cell  count  for  layer	2, category 5.
	      cat.histo[2,]  is the full histogram for layer 2.

       Note:  since more than one layer may occur in the data, and the	number
       of  categories  in  each  layer varies, it was necessary to create this
       structure with sufficient dimension to hold the largest category  value
       for  all  layers.  Histogram data for categories which do not occur are
       set to NA ("S" notation for "no data").	 However,  there  is  also  an
       individual   histogram	structure   for   each	 layer:   cat.1.histo,
       cat.2.histo, etc.  These are simple vectors.

       ccaatt..nnaammee
	      This structure contains the names for the categories in each map
	      layer.   It  is  a  2-dimensional character array (matrix).  The
	      first subscript references the map layer.  The second  subscript
	      references the category.

       Examples:
	      cat.name[2,5]   is   the	 name  of  category  5	for  layer  2.
	      cat.name[2,]  are all category names for layer 2.

       Note:  since more than one layer may occur in the data, and the	number
       of  categories  in  each  layer varies, it was necessary to create this
       structure with sufficient dimension to hold the largest category  value
       for all layers.	Names for categories which do not occur are set to ''.
       However, there is also an individual category name structure  for  each
       layer:  cat.1.name, cat.2.name, etc.  These are simple vectors.

       ssiittee..ddaattaa
	      This  structure  contains  the  data  for  each  site.   It is a
	      3-dimensional integer array.  The first subscript references the
	      categories  which  occurred  at  the site.  The second subscript
	      references the site.  The third subscript references the	layer.

       Examples:
	      site.data[,5,3]	is   the   data   for	site  5  in  layer  3.
	      site.data[,2,]   is  the	data  for  site  2  in	 all   layers.
	      site.data[,,1]  is all site data for layer 1.

       Note:  the size of the first dimension will be the number of cells in a
       site, the size of the second dimension will be the number of sites, the
       size of the third dimension will be the number of layers.

       ssiittee..mmooddee
	      Since  "S"  does	not  provide a statistical mode function, this
	      structure contains the most frequently  occurring  category  for
	      each  site  in  each layer.  It is a 2-dimensional integer array
	      (matrix).  The first subscript references the site.  The	second
	      subscript references the layer.

       Examples:
	      site.mode[5,3] is the mode for site 5 in layer 3.  site.mode[2,]
	      are the modes for site 2 in all layers.  site.mode[,1]  are  all
	      site modes for layer 1.

       Note:   this  'mode'  is  not the strict definition of the mode.  Since
       category 0 (which in "S" is category 1) represents "no data" in the GIS
       databases,  it  was excluded from the mode calculations (essentially as
       if it had been NA).  For example, if the data for a site are 1 1 1 1  2
       2 3 2 3 1 1, the mode will be 2.

       llaayyeerr..nnaammee
	      This  structure  contains  the  raster map layer names.  It is a
	      2-dimensional array (i.e., a matrix).  The first subscript  ref-
	      erences  the map layer.  The second subscript selects either the
	      map layer name, or the map layer TITLE.

       Examples:
	      layer.name[3,1] is the name of layer 3.  layer.name[3]   is also
	      the  name  of  layer 3.  layer.name[2]   is the name of layer 2.
	      layer.name[3,2] is the TITLE for layer 3.


       llooccaattiioonn
	      This is a simple character vector giving the GRASS location from
	      which the data was extracted.

       mmaappsseett This is a simple character vector giving the GRASS mapset.

       nnllaayyeerrss
	      This is a simple integer giving the number of map layers.

       nnssiitteess This is a simple integer giving the number of sites.

       ssiittee..ee This  is	a  simple integer vector giving the geographic easting
	      for each site.

       ssiittee..nn This is a simple integer vector giving the  geographic  northing
	      for each site.

       ssiittee..nnaammee
	      This  is	a  simple  character vector giving the description for
	      each site.

       ssiitteelliisstt
	      This is a simple character vector giving the name  and  descrip-
	      tion of the site lists file from which the sites were taken.

       wwiinndd..nn,, wwiinndd..ss,, wwiinndd..ww,, wwiinndd..ee
	      These  are  simple  real	numbers giving the north, south, west,
	      east of the mapset's current geographic region.

       wwiinndd..rreess
	      This is a simple real number giving the GRASS  database  resolu-
	      tion (in meters).


SS MMAACCRROOSS
       You  may  find  the  following  "S" macros helpful when referencing the
       'site.data' and 'site.mode' structures, since they allow you to specify
       parameters:
       MACRO site.data(site, layer)
       ({
	    site.data[ , site, layer]
       })
       END


       MACRO site.mode(site, layer)
       ({
	    site.mode[site, layer]
       })
       END


MMAACCRROO UUSSAAGGEE
       To select the site.data for all sites for layer 2: ??ssiittee..ddaattaa((llaayyeerr==22))

       To select the site.data for site 4 in all layers: ??ssiittee..ddaattaa((ssiittee==44))

       To    select    the    site.mode    for	  site	  10   in   layer   1:
       ??ssiittee..mmooddee((llaayyeerr==11,,ssiittee==1100))


SSOORRRRYY,, BBUUTT ......
       These macros are not provided by the interface.	To use	these  macros,
       you  will  have to type them into a text file and then, from "S", issue
       the command: ddeeffiinnee((""""))


SSEEEE AALLSSOO
       _s_._d_b_._r_i_m

       _s_._i_n_._a_s_c_i_i

       _s_._m_e_n_u

       _s_._o_u_t_._a_s_c_i_i

       _s_._s_u_r_f_._i_d_w

       _s_i_t_e_s_._f_o_r_m_a_t

       _s_i_t_e_s_._o_c_c_u_r

       _s_i_t_e_s_._r_e_p_o_r_t

       _L_a_s_t _c_h_a_n_g_e_d_: _$_D_a_t_e_: _2_0_0_2_/_0_1_/_2_5 _0_5_:_4_5_:_3_5 _$



GRASS 5.0							    sites.S(1)
