#pgm	mol	matrix	g_open	g_ext	fr_shft	e_cut	ktup
#	-n/-p	-s	-e	-f	-h/-j	-E	argv[3]
fasta	prot	bl50	-10	-2	-	10.0	2
fasta	dna	+5/-4	-14	-4	-	2.0	6
ssearch	prot	bl50	-10	-2	-	10.0	-
ssearch	dna	+5/-4	-14	-4	-	2.0	-
fastx	prot	BL50	-12	-2	-20	5.0	2
fasty	prot	BL50	-12	-2	-20/-24	5.0	2
tfastx	dna	BL50	-14	-2	-20	5.0	2
tfasty	dna	BL50	-14	-2	-20/-24	5.0	2
fasts	prot	MD20-MS	-	-	-	5.0	-
tfasts	prot	MD10-MS	-	-	-	2.0	-
fastf	prot	MD20	-	-	-	5.0	-
tfastf	prot	MD10	-	-	-	2.0	-
fastm	prot	MD20	-	-	-	5.0	-
tfastm	prot	MD10	-	-	-	2.0	-
