Bio::Tools::Run::PiseApplication::drawtree(3)

NAME
Bio::Tools::Run::PiseApplication::drawtree

SYNOPSIS
  #

DESCRIPTION
Bio::Tools::Run::PiseApplication::drawtree

      Bioperl class for:

        Phylip  drawtree - Plots an unrooted tree diagram (Felsenstein)

        References:

                Felsenstein, J.  1993.  PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author.  Department of Genetics, University of Washington, Seattle.

                Felsenstein, J.  1989.  PHYLIP -- Phylogeny Inference Package (Version 3.2). Cladistics  5: 164-166.

      Parameters:

        (see also:
          http://bioweb.pasteur.fr/seqanal/interfaces/drawtree.html
         for available values):

                drawtree (String)

                treefile (InFile)
                        Tree File
                        pipe: phylip_tree

                screen_type (String)

                plotter (Excl)
                        Which plotter or printer will the tree be drawn on

                xxres (Float)
                        X resolution

                xyres (Float)
                        Y resolution

                laserjet_resolution (Excl)
                        Laserjet resolution

                pcx_resolution (Excl)
                        Paintbrush PCX resolution

                preview (String)

                branch_lengths (Switch)
                        Use branch lengths

                angle (Excl)
                        Angle of labels

                fixed_angle (Float)
                        Fixed angle: Are the labels to be plotted vertically (90), horizontally (0), or downwards (-90)?

                rotation (Float)
                        Rotation of tree (in degrees from 360 to -360)

                arc (Float)
                        Angle of arc for tree (in degrees from 0 to 360)

                iterate (Excl)
                        Iterate to improve tree

                scale (Float)
                        Scale of branch length (default: Automatically rescaled)

                horizontal_margins (Float)
                        Horizontal margins

                vertical_margins (Float)
                        Vertical margins

                character_height (Float)
                        Relative character height

                font (String)
                        Font (PostScript only)

                tops (String)

                topict (String)

                toxbm (String)

                confirm (String)

FEEDBACK

  Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org              - General discussion
  http://bioperl.org/MailList.shtml  - About the mailing lists

  Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

  bioperl-bugs@bioperl.org
  http://bioperl.org/bioperl-bugs/

AUTHOR
Catherine Letondal (letondal@pasteur.fr)

COPYRIGHT
Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

DISCLAIMER
This software is provided "as is" without warranty of any kind.

SEE ALSO

•   http://bioweb.pasteur.fr/seqanal/interfaces/drawtree.html

•   Bio::Tools::Run::PiseApplication

•   Bio::Tools::Run::AnalysisFactory::Pise

•   Bio::Tools::Run::PiseJob

  new
 Title   : new()
 Usage   : my $drawtree = Bio::Tools::Run::PiseApplication::drawtree->new($location, $email, @params);
 Function: Creates a Bio::Tools::Run::PiseApplication::drawtree object.
           This method should not be used directly, but rather by
           a Bio::Tools::Run::AnalysisFactory::Pise instance.
           my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new();
           my $drawtree = $factory->program('drawtree');
 Example : -
 Returns : An instance of Bio::Tools::Run::PiseApplication::drawtree.