Bio::Tools::Run::PiseApplication::melting(3)

NAME
Bio::Tools::Run::PiseApplication::melting

SYNOPSIS
  #

DESCRIPTION
Bio::Tools::Run::PiseApplication::melting

      Bioperl class for:

        MELTING enthalpie, entropy and melting temperature (N. Le Novere)

        References:

                Nicolas Le Novere (2001), MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics 17(12), 1226-1227

      Parameters:

        (see also:
          http://bioweb.pasteur.fr/seqanal/interfaces/melting.html
         for available values):

                melting (String)

                hybridation_type (Excl)
                        Hybridisation type (-H)

                nnfile (Excl)
                        Nearest Neighbor parameters set (-A)

                sequence (String)
                        Sequence string (-S)

                complement_string (String)
                        Complementary sequence (-C)

                salt_concentratio (Float)
                        Salt concentration (0.0 < x < 10.0 M) (-N)

                nucacid_concentration (Float)
                        Nucleic acid concentration in excess (0.0 < x < 0.1 M) (-P)

                correction_factor (Float)
                        Nucleic acid correction factor (-F)

                salt_correction (Excl)
                        Salt correction (-K)

                approx (Switch)
                        Force approximative temperature computation (-x)

                dangling ends (Switch)
                        parameters for dangling ends: dnadnade.nn

                mismatches (Switch)
                        nn parameters for mismatches: dnadnamm.nn

FEEDBACK

  Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org              - General discussion
  http://bioperl.org/MailList.shtml  - About the mailing lists

  Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

  bioperl-bugs@bioperl.org
  http://bioperl.org/bioperl-bugs/

AUTHOR
Catherine Letondal (letondal@pasteur.fr)

COPYRIGHT
Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

DISCLAIMER
This software is provided "as is" without warranty of any kind.

SEE ALSO

•   http://bioweb.pasteur.fr/seqanal/interfaces/melting.html

•   Bio::Tools::Run::PiseApplication

•   Bio::Tools::Run::AnalysisFactory::Pise

•   Bio::Tools::Run::PiseJob

  new
 Title   : new()
 Usage   : my $melting = Bio::Tools::Run::PiseApplication::melting->new($location, $email, @params);
 Function: Creates a Bio::Tools::Run::PiseApplication::melting object.
           This method should not be used directly, but rather by
           a Bio::Tools::Run::AnalysisFactory::Pise instance.
           my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new();
           my $melting = $factory->program('melting');
 Example : -
 Returns : An instance of Bio::Tools::Run::PiseApplication::melting.