Bio::Search::Result::WABAResult(3)

NAME
Bio::Search::Result::WABAResult - Result object for WABA alignment output

SYNOPSIS
# use this object exactly as you would a GenericResult # the only extra method is query_database which is the # name of the file where the query sequence came from

DESCRIPTION
This object is for WABA result output, there is little difference between this object and a GenericResult save the addition of one method query_database. Expect many of the fields for GenericResult to be empty however as WABA was not intended to provide a lot of extra information other than the alignment.

FEEDBACK

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Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

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AUTHOR - Jason Stajich
Email jason@bioperl.org

Describe contact details here

CONTRIBUTORS
Additional contributors names and emails here

APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

  new
 Title   : new
 Usage   : my $obj = new Bio::Search::Result::WABAResult();
 Function: Builds a new Bio::Search::Result::WABAResult object
 Returns : Bio::Search::Result::WABAResult
 Args    : -query_database => "name of the database where the query came from"

  query_database
 Title   : query_database
 Usage   : $obj->query_database($newval)
 Function: Data field for the database filename where the
           query sequence came from
 Returns : value of query_database
 Args    : newvalue (optional)

  All other methods are inherited from Bio::Search::Result::GenericResult
See the Bio::Search::Result::GenericResult for complete documentation of the rest of the methods that are available for this module.