Bio::Matrix::IO::scoring(3)

NAME
Bio::Matrix::IO::scoring - A parser for PAM/BLOSUM matricies

SYNOPSIS
  use Bio::Matrix::IO;
  my $parser = new Bio::Matrix::IO(-format => 'scoring',
                                   -file   => 'BLOSUM50');
  my $matrix = $parser->next_matrix;

DESCRIPTION
Describe the object here

FEEDBACK

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  bioperl-l@bioperl.org              - General discussion
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  Reporting Bugs
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  http://bugzilla.bioperl.org/

AUTHOR - Jason Stajich
Email jason-at-bioperl-dot-org

Describe contact details here

CONTRIBUTORS
Additional contributors names and emails here

APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

  new
 Title   : new
 Usage   : my $obj = new Bio::Matrix::IO::scoring();
 Function: Builds a new Bio::Matrix::IO::scoring object
 Returns : an instance of Bio::Matrix::IO::scoring
 Args    :

  next_matrix
 Title   : next_matrix
 Usage   : my $matrux = $parser->next_matrix
 Function: parses a scoring matrix (BLOSUM,PAM styles)
 Returns : L<Bio::Matrix::Scoring>
 Args    : none

  write_matrix
 Title   : write_matrix
 Usage   : $matio->write_matrix($matrix)
 Function: Write out a matrix in the BLOSUM/PAM format
 Returns : none
 Args    : L<Bio::Matrix::Scoring>