Bio::TreeIO::nhx(3)

NAME
Bio::TreeIO::nhx - TreeIO implementation for parsing
    Newick/New Hampshire eXtendend (NHX) format.

SYNOPSIS
  # do not use this module directly
  use Bio::TreeIO;
  my $treeio = new Bio::TreeIO(-format => 'nhx', -file => 'tree.dnd');
  my $tree = $treeio->next_tree;

DESCRIPTION
This module handles parsing and writing of Newick/New Hampshire eXtended (NHX) format.

FEEDBACK

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User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org              - General discussion
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  Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

  bioperl-bugs@bioperl.org
  http://bugzilla.bioperl.org/

AUTHOR - Aaron Mackey
Email amackey@virginia.edu

Describe contact details here

CONTRIBUTORS
Additional contributors names and emails here

APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

  next_tree
 Title   : next_tree
 Usage   : my $tree = $treeio->next_tree
 Function: Gets the next tree in the stream
 Returns : Bio::Tree::TreeI
 Args    : none

  write_tree
 Title   : write_tree
 Usage   : $treeio->write_tree($tree);
 Function: Write a tree out to data stream in nhx format
 Returns : none
 Args    : Bio::Tree::TreeI object