Bio::AlignIO::prodom(3)

NAME
Bio::AlignIO::prodom - prodom sequence input/output stream

SYNOPSIS
Do not use this module directly. Use it via the Bio::AlignIO class.

DESCRIPTION
This object can transform Bio::Align::AlignI objects to and from prodom flat file databases.

FEEDBACK

  Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.bioperl.org/

AUTHORS - Peter Schattner
Email: schattner@alum.mit.edu

APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

  next_aln
 Title   : next_aln
 Usage   : $aln = $stream->next_aln()
 Function: returns the next alignment in the stream.
 Returns : L<Bio::Align::AlignI> object
 Args    : NONE

  write_aln
 Title   : write_aln
 Usage   : $stream->write_aln(@aln)
 Function: writes the $aln object into the stream in prodom format  ###Not yet implemented!###
 Returns : 1 for success and 0 for error
 Args    : L<Bio::Align::AlignI> object