# report.rb

Path: | lib/bio/appl/clustalw/report.rb
Last Update: | Thu Nov 19 15:47:02 +0000 2009

# bio/appl/clustalw/report.rb - CLUSTAL W format data (*.aln) class

Copyright: | Copyright (C) 2003 GOTO Naohisa <ngoto@gen-info.osaka-u.ac.jp>
License: | The Ruby License

     $Id: report.rb,v 1.13 2007/07/18 08:47:39 ngoto Exp $

Bio::ClustalW::Report is a CLUSTAL W report (*.aln file) parser. CLUSTAL W is a very popular software for multiple sequence alignment.

## References

- Thompson,J.D., Higgins,D.G. and Gibson,T.J.. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22:4673-4680, 1994. nar.oxfordjournals.org/cgi/content/abstract/22/22/4673
- www.ebi.ac.uk/clustalw/
- ftp.ebi.ac.uk/pub/software/unix/clustalw/

### Required files

bio/sequence bio/db bio/alignment bio/appl/clustalw

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