# muscle.rb

Path: | lib/bio/appl/muscle.rb
Last Update: | Thu Nov 19 15:47:02 +0000 2009

# bio/appl/muscle.rb - MUSCLE application wrapper class

Copyright: | Copyright (C) 2006-2007 Jeffrey Blakeslee and John Conery University of Oregon <jeffb@uoregon.edu> Naohisa Goto <ng@bioruby.org>
License: | The Ruby License

     $Id: muscle.rb,v 1.1 2007/07/16 12:25:50 ngoto Exp $

Bio::Muscle is a wrapper class to execute MUSCLE.

## References

- www.drive5.com/muscle/
- Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32: 1792-1797, 2004.
- Edgar, R.C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113, 2004.

[Validate]