# index.rb

Path: | lib/bio/io/flatfile/index.rb
Last Update: | Thu Nov 19 15:47:02 +0000 2009

# bio/io/flatfile/index.rb - OBDA flatfile index

Copyright: | Copyright (C) 2002 GOTO Naohisa <ng@bioruby.org>
License: | The Ruby License

     $Id: index.rb,v 1.19 2007/04/05 23:35:41 trevor Exp $

# About Bio::FlatFileIndex

Please refer documents of following classes. Classes/modules marked ’#’ are internal use only.

## Classes/modules in index.rb

- class Bio::FlatFileIndex
- class Bio::FlatFileIndex::Results
- module Bio::FlatFileIndex::DEBUG
- module Bio::FlatFileIndex::Template
- class Bio::FlatFileIndex::Template::NameSpace
- class Bio::FlatFileIndex::FileID
- class Bio::FlatFileIndex::FileIDs
- module Bio::FlatFileIndex::Flat_1
- class Bio::FlatFileIndex::Flat_1::Record
- class Bio::FlatFileIndex::Flat_1::FlatMappingFile
- class Bio::FlatFileIndex::Flat_1::PrimaryNameSpace
- class Bio::FlatFileIndex::Flat_1::SecondaryNameSpace
- class Bio::FlatFileIndex::NameSpaces
- class Bio::FlatFileIndex::DataBank

## Classes/modules in indexer.rb

- module Bio::FlatFileIndex::Indexer
- class Bio::FlatFileIndex::Indexer::NameSpace
- class Bio::FlatFileIndex::Indexer::NameSpaces
- module Bio::FlatFileIndex::Indexer::Parser
- class Bio::FlatFileIndex::Indexer::Parser::TemplateParser
- class Bio::FlatFileIndex::Indexer::Parser::GenBankParser
- class Bio::FlatFileIndex::Indexer::Parser::GenPeptParser
- class Bio::FlatFileIndex::Indexer::Parser::EMBLParser
- class Bio::FlatFileIndex::Indexer::Parser::SPTRParser
- class Bio::FlatFileIndex::Indexer::Parser::FastaFormatParser
- class Bio::FlatFileIndex::Indexer::Parser::MaXMLSequenceParser
- class Bio::FlatFileIndex::Indexer::Parser::MaXMLClusterParser
- class Bio::FlatFileIndex::Indexer::Parser::BlastDefaultParser
- class Bio::FlatFileIndex::Indexer::Parser::PDBChemicalComponentParser

## Classes/modules in bdb.rb

- module Bio::FlatFileIndex::BDBDefault
- class Bio::FlatFileIndex::BDBWrapper
- module Bio::FlatFileIndex::BDB_1
- class Bio::FlatFileIndex::BDB_1::BDBMappingFile
- class Bio::FlatFileIndex::BDB_1::PrimaryNameSpace
- class Bio::FlatFileIndex::BDB_1::SecondaryNameSpace

# References

- ((<URL:obda.open-bio.org/>))
- ((<URL:cvs.open-bio.org/cgi-bin/viewcvs/viewcvs.cgi/obda-specs/?cvsroot=obf-common>))

### Required files

bio/io/flatfile/indexer tempfile

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