# The FreeBSD Ports Collection ("biology")

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This is the one-line description for this category:

Biology

Here are the one-line descriptions for each items in this directory:

    babel-1.6: Conversion program among various molecular file formats
    biojava-1.01: Open-source java tools for processing biological data
    chemeq-1.10: Outputs LaTeX code for chemical reaction
    clustalw-1.81_1: CLUSTAL W Multiple Sequence Alignment Program
    deft-2.2_1: Density functional molecular orbital calculation
    emboss-1.7.0_1: A collection of open source tools for genetic sequence analysis
    fastdnaml-1.2.2: The faster variant of DNAML, makes phylogenetic trees using maximum likelihood
    gperiodic-1.2.2: Displays a periodic table of the elements
    hmmer-2.1.1: Profile hidden Markov models for biological sequence analysis
    kinemage-4.2: A molecular visualization program with special functions
    molden-3.6_1: Display molecular orbitals and electron densities in 2D and 3D
    mopac-7.02: Semi-empirical (MNDO, etc.) molecular orbital calculation
    nab-4.2: This is nab (nucleic acid builder), a language for macromolecules
    ncbi-toolkit-2000.10.31_1: National Center for Biotechnology Information (NCBI) Development Toolkit.
    ortep3-1.0.3_2: The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
    p5-AcePerl-1.67: Perl interface to the ACEDB genome database system
    p5-bioperl-0.6.2: A collection of Perl modules for bioinformatics
    paml-3.01: Phylogenetic Analysis by Maximum Likelihood (PAML)
    phylip-3.5: A Phylogeny Inference Package
    platon-2000.06.05: Tool for viewing molecular/crystallographic structures
    povchem-1.0_1: Simple yet powerful tool to generate POV from a PDB file
    psi88-1.0: Plotting wavefunctions (molecular orbitals) in 3D
    py-biopython-0.90.d03: A collection of Python modules for bioinformatics
    rasmol-2.7.1: Fast Molecular Visualization Program
    seaview-1.0: Multiple DNA sequence alignment editor
    sim4-2000.10.19: An algorithm for aligning expressed DNA with genomic sequences
    tinker-3.7: A general purpose molecular modelling package
    xdrawchem-0.83: Chemical drawing program
    xmolwt-0.3: Calculate formula weight and percent of each element for a given formula

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