# Survival analysis, including penalised likelihood.

A B C D F H I J K L M O P R S T U V misc

## -- A --

aml | Acute Myelogenous Leukemia survival data
anova.coxph | Analysis of Deviance for Cox model.
anova.coxphlist | Analysis of Deviance for Cox model.
anova.survreg | Regression for a Parametric Survival Model
anova.survreglist | Regression for a Parametric Survival Model
as.character.date | Date Objects
as.character.Surv | Create a Survival Object
as.data.frame.date | Date Objects
as.data.frame.Surv | Create a Survival Object
as.date | Coerce Data to Dates
as.vector.date | Date Objects
attrassign | Create new-style "assign" attribute

## -- B --

basehaz | Compute a Survival Curve for Censored Data
bladder | Bladder Cancer Recurrences
bladder2 | Bladder Cancer Recurrences

## -- C --

cancer | Mayo Clinic Lung Cancer Data
censorReg | Regression for a Parametric Survival Model
clogit | Conditional logistic regression
cluster | Identify Clusters
colon | Chemotherapy for Stage B/C colon cancer
cox.zph | Test the Proportional Hazards Assumption of a Cox Regression
coxph | Fit Proportional Hazards Regression Model
coxph.control | Package options for survreg and coxph
coxph.detail | Details of a Cox Model Fit
coxph.getdata | Fit Proportional Hazards Regression Model
coxph.object | Proportional Hazards Regression Object
coxph.penalty | Fit Proportional Hazards Regression Model

## -- D --

date.ddmmmyy | Format a Julian date
date.mdy | Convert from Julian Dates to Month, Day, and Year
date.mmddyy | Format a Julian date
date.mmddyyyy | Format a Julian date

## -- F --

format.Surv | Create a Survival Object
frailty | (Approximate) Frailty models

## -- H --

heart | Stanford Heart Transplant data

## -- I --

is.date | Date Objects
is.na.date | Date Objects
is.na.ratetable | Ratetable reference in formula
is.na.Surv | Create a Survival Object
is.ratetable | Verify that an Object is of Class `ratetable'
is.Surv | Create a Survival Object

## -- J --

jasa | Stanford Heart Transplant data
jasa1 | Stanford Heart Transplant data

## -- K --

kidney | Kidney data from survival5

## -- L --

labels.survreg | Regression for a Parametric Survival Model
leukemia | Acute Myelogenous Leukemia survival data
lines.survfit | Add Lines or Points to a Survival Plot
lung | Mayo Clinic Lung Cancer Data

## -- M --

Math.date | Date Objects
Math.ratetable | Verify that an Object is of Class `ratetable'
Math.Surv | Create a Survival Object
mdy.date | Convert to Julian Dates
model.frame.coxph | Fit Proportional Hazards Regression Model
model.frame.survreg | Regression for a Parametric Survival Model

## -- O --

Ops.date | Date Objects
Ops.ratetable | Verify that an Object is of Class `ratetable'
Ops.Surv | Create a Survival Object
ovarian | Ovarian cancer survival data

## -- P --

pbc | Mayo Clinic Primary Biliary Cirrhosis Data
plot.cox.zph | Graphical Test of Proportional Hazards
plot.date | Date Objects
plot.survfit | Plot Method for `survfit'
points.survfit | Add Lines or Points to a Survival Plot
predict.coxph | Predictions for Cox model
predict.survreg | Predicted Values for a `survreg' Object
print.cox.zph | Test the Proportional Hazards Assumption of a Cox Regression
print.coxph | Proportional Hazards Regression Object
print.coxph.null | Fit Proportional Hazards Regression Model
print.coxph.penal | Fit Proportional Hazards Regression Model
print.date | Date Objects
print.ratetable | Ratetable reference in formula
print.summary.survfit | Summary of a Survival Curve
print.summary.survreg | Regression for a Parametric Survival Model
print.Surv | Create a Survival Object
print.survdiff | Test Survival Curve Differences
print.survexp | Compute Expected Survival
print.survfit | Print a Short Summary of a Survival Curve
print.survreg | Parametric Survival Model Object
print.survreg.penal | Regression for a Parametric Survival Model
pspline | Penalised smoothing splines
pyears | Person Years

## -- R --

ratetable | Ratetable reference in formula
ratetables | Census Data Sets for the Expected Survival and Person Years Functions
rats | Rat data from survival5
residuals.coxph | Calculate Residuals for a `coxph' Fit
residuals.survreg | Compute Residuals for `survreg' Objects
ridge | Ridge regression

## -- S --

stanford2 | More Stanford Heart Transplant data
strata | Identify Strata Variables
summary.coxph | Proportional Hazards Regression Object
summary.coxph.penal | Fit Proportional Hazards Regression Model
Summary.date | Date Objects
summary.date | Date Objects
summary.ratetable | Ratetable reference in formula
Summary.Surv | Create a Survival Object
summary.survfit | Summary of a Survival Curve
summary.survreg | Parametric Survival Model Object
Surv | Create a Survival Object
survdiff | Test Survival Curve Differences
survexp | Compute Expected Survival
survexp.az | Census Data Sets for the Expected Survival and Person Years Functions
survexp.azr | Census Data Sets for the Expected Survival and Person Years Functions
survexp.cfit | Compute Expected Survival
survexp.fit | Work Function to Compute Expected Survival
survexp.fl | Census Data Sets for the Expected Survival and Person Years Functions
survexp.flr | Census Data Sets for the Expected Survival and Person Years Functions
survexp.mn | Census Data Sets for the Expected Survival and Person Years Functions
survexp.mnwhite | Census Data Sets for the Expected Survival and Person Years Functions
survexp.us | Census Data Sets for the Expected Survival and Person Years Functions
survexp.usr | Census Data Sets for the Expected Survival and Person Years Functions
survexp.uswhite | Census Data Sets for the Expected Survival and Person Years Functions
survexp.wnc | Census Data Sets for the Expected Survival and Person Years Functions
survfit | Compute a Survival Curve for Censored Data
survfit.coxph.null | Compute a Survival Curve for Censored Data
survfit.km | Compute a Survival Curve for Censored Data
survfit.object | Survival Curve Object
survobrien | O'Brien's Test for Association of a Single Variable with Survival
survReg | Regression for a Parametric Survival Model
survreg | Regression for a Parametric Survival Model
survreg.control | Package options for survreg and coxph
survreg.distributions | Parametric Survival Distributions
survreg.object | Parametric Survival Model Object
survreg.old | Old (survival4) Regression for a parametric survival model
survSplit | Split a survival data set at specified times

## -- T --

tcut | Factors for person-year calculations
tobin | Tobin's Tobit data

## -- U --

untangle.specials | Help Process the `specials' Argument of the `terms' Function.

## -- V --

vcov.coxph | Fit Proportional Hazards Regression Model
vcov.survreg | Regression for a Parametric Survival Model
veteran | Veterans' Administration Lung Cancer study

## -- misc --

[.cox.zph | Test the Proportional Hazards Assumption of a Cox Regression
[.coxph.penalty | Fit Proportional Hazards Regression Model
[.date | Date Objects
[.ratetable | Ratetable reference in formula
[.ratetable2 | Ratetable reference in formula
[.Surv | Create a Survival Object
[.survfit | Compute a Survival Curve for Censored Data
[.tcut | Factors for person-year calculations
[[.date | Date Objects