Bio::DB::GFF::Aggregator::match -- Match aggregator use Bio::DB::GFF; # Open the sequence database my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql', -dsn => 'dbi:mysql:elegans42', -aggregator => ['match'], ); ------------------------------------------------- Aggregator method: match Main method: match Sub methods: similarity HSP ------------------------------------------------- This aggregator is used for Sequence Ontology-compatible gapped alignments, in which there is a single top-level alignment called "match" and a series of subalignments called either "similarity" or "HSP". Also see the "alignment" aggregator.

method
Title : method Usage : $aggregator->method Function: return the method for the composite object Returns : the string "match" Args : none Status : Public

part_names
Title : part_names Usage : $aggregator->part_names Function: return the methods for the sub-parts Returns : the list "similarity", "HSP" Args : none Status : Public

main_name
Title : main_name Usage : $aggregator->main_name Function: return the method for the main component Returns : the string "match" Args : none Status : Public None reported. Bio::DB::GFF, Bio::DB::GFF::Aggregator Lincoln Stein <lstein@cshl.org>. Copyright (c) 2001 Cold Spring Harbor Laboratory. This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.