Bio::AlignIO::psi - Read/Write PSI-BLAST profile alignment files This module will parse PSI-BLAST output of the format seqid XXXX This is for parser for a psi-blast blocks.

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/ Email jason@bioperl.org Describe contact details here Additional contributors names and emails here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new
Title : new Usage : my $obj = new Bio::AlignIO::psi(); Function: Builds a new Bio::AlignIO::psi object Returns : Bio::AlignIO::psi Args :

next_aln
Title : next_aln Usage : $aln = $stream->next_aln() Function: returns the next alignment in the stream Returns : L<Bio::Align::AlignI> object Args : NONE

write_aln
Title : write_aln Usage : $stream->write_aln(@aln) Function: writes the NCBI psi-format object (.aln) into the stream Returns : 1 for success and 0 for error Args : L<Bio::Align::AlignI> object