chaos_plot - a chaos plot from DNA and RNA sequences chaos_plot.pl -i/--input=INPUTFILE -f/--format=SEQFORMAT -o/--output=OUTPUTFILE -g/--graphics=GRAPHIC FORMAT -w/--width=WIGHT -h/--height=HEIGHT This scripts generates image files using GD image library to visualize nucleotide sequences using chaos plot. Valid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif. The default size of the image file is 600x400. The sequence input can be provided using any of the three methods: chaos_plot filename chaos_plot -i filename chaos_plot < filename

Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/MailList.shtml - About the mailing lists

Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/ Email jason@bioperl.org This code is based on EMBOSS C code for chaos.c by Ian Longden. Included are documentation from EMBOSS code: Chaos produces a chaos plot. The original application is part of the ACEDB genome database package, written by ** Richard Durbin (MRC LMB, UK) rd@mrc-lmba.cam.ac.uk, and Jean Thierry-Mieg (CRBM du CNRS, France) mieg@crbm1.cnusc.fr