Bio::Tools::Coil use Bio::Tools::Coil my $parser = new Bio::Tools::Coil(); while( my $sp_feat = $parser->next_result($file) ) { #do something #eg push @sp_feat, $sp_feat; } Parser for Coil output

Mailing Lists
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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bio.perl.org http://bugzilla.bioperl.org/ Based on the EnsEMBL module Bio::EnsEMBL::Pipeline::Runnable::Protein::Coil originally written by Marc Sohrmann (ms2@sanger.ac.uk) Written in BioPipe by Balamurugan Kumarasamy <savikalpa@fugu-sg.org> Cared for by the Fugu Informatics team (fuguteam@fugu-sg.org) The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

parse_results
Title : parse_results Usage : obj->parse_results Function: Parses the coil output. Automatically called by next_result() if not yet done. Example : Returns :

_result
Title : _result Usage : $feat = $obj->_result() Function: internal Example : Returns :

_add_prediction
Title : _add_prediction() Usage : $obj->_add_prediction($feat) Function: internal Example : Returns :

_predictions_parsed
Title : _predictions_parsed Usage : $obj->_predictions_parsed Function: internal Example : Returns : TRUE or FALSE

create_feature
Title : create_feature Usage : obj->create_feature(\%feature) Function: Internal(not to be used directly) Returns : Args :

_read_fasta
Title : _read_fasta Usage : obj->_read_fasta($file) Function: Internal(not to be used directly) Returns : Args :