Bio::TreeIO::nexus - A TreeIO driver module for parsing Nexus tree output from PAUP use Bio::TreeIO; my $in = new Bio::TreeIO(-file => 't/data/cat_tre.tre'); while( my $tree = $in->next_tree ) { } This is a driver module for parsing PAUP Nexus tree format which basically is just a remapping of trees.

Mailing Lists
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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.bioperl.org/ Email jason-at-open-bio-dot-org Describe contact details here Additional contributors names and emails here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

next_tree
Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : Bio::Tree::TreeI Args : none

write_tree
Title : write_tree Usage : $treeio->write_tree($tree); Function: Writes a tree onto the stream Returns : none Args : Bio::Tree::TreeI