Bio::SearchIO::SearchResultEventBuilder - Event Handler for SearchIO events. # Do not use this object directly, this object is part of the SearchIO # event based parsing system. This object handles Search Events generated by the SearchIO classes and build appropriate Bio::Search::* objects from them.

Mailing Lists
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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/ Email jason@bioperl.org Additional contributors names and emails here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new
Title : new Usage : my $obj = new Bio::SearchIO::SearchResultEventBuilder(); Function: Builds a new Bio::SearchIO::SearchResultEventBuilder object Returns : Bio::SearchIO::SearchResultEventBuilder Args : -hsp_factory => Bio::Factory::ObjectFactoryI -hit_factory => Bio::Factory::ObjectFactoryI -result_factory => Bio::Factory::ObjectFactoryI See Bio::Factory::ObjectFactoryI for more information

will_handle
Title : will_handle Usage : if( $handler->will_handle($event_type) ) { ... } Function: Tests if this event builder knows how to process a specific event Returns : boolean Args : event type name

SAX methods

start_result
Title : start_result Usage : $handler->start_result($resulttype) Function: Begins a result event cycle Returns : none Args : Type of Report

end_result
Title : end_result Usage : my @results = $parser->end_result Function: Finishes a result handler cycle Returns : A Bio::Search::Result::ResultI Args : none

start_hsp
Title : start_hsp Usage : $handler->start_hsp($name,$data) Function: Begins processing a HSP event Returns : none Args : type of element associated data (hashref)

end_hsp
Title : end_hsp Usage : $handler->end_hsp() Function: Finish processing a HSP event Returns : none Args : type of event and associated hashref

start_hit
Title : start_hit Usage : $handler->start_hit() Function: Starts a Hit event cycle Returns : none Args : type of event and associated hashref

end_hit
Title : end_hit Usage : $handler->end_hit() Function: Ends a Hit event cycle Returns : Bio::Search::Hit::HitI object Args : type of event and associated hashref

Factory methods

register_factory
Title : register_factory Usage : $handler->register_factory('TYPE',$factory); Function: Register a specific factory for a object type class Returns : none Args : string representing the class and Bio::Factory::ObjectFactoryI See Bio::Factory::ObjectFactoryI for more information

factory
Title : factory Usage : my $f = $handler->factory('TYPE'); Function: Retrieves the associated factory for requested 'TYPE' Returns : a Bio::Factory::ObjectFactoryI Throws : Bio::Root::BadParameter if none registered for the supplied type Args : name of factory class to retrieve See Bio::Factory::ObjectFactoryI for more information

inclusion_threshold
See Bio::SearchIO::blast::inclusion_threshold.