Bio::TreeIO::newick - TreeIO implementation for parsing Newick/New Hampshire/PHYLIP format. # do not use this module directly use Bio::TreeIO; my $treeio = new Bio::TreeIO(-format => 'newick', -file => 't/data/LOAD_Ccd1.dnd'); my $tree = $treeio->next_tree; This module handles parsing and writing of Newick/PHYLIP/New Hampshire format.

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/ Email jason@bioperl.org Describe contact details here Additional contributors names and emails here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

next_tree
Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : Bio::Tree::TreeI Args : none

write_tree
Title : write_tree Usage : $treeio->write_tree($tree); Function: Write a tree out to data stream in newick/phylip format Returns : none Args : Bio::Tree::TreeI object