Bio::Structure::Model - Bioperl structure Object, describes a Model #add synopsis here This object stores a Bio::Structure::Chain

Mailing Lists
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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bio.perl.org http://bugzilla.bioperl.org/ Email kris.boulez@algonomics.com The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new()
Title : new() Usage : $struc = Bio::Structure::Model->new( -id => 'human_id', ); Function: Returns a new Bio::Structure::Model object from basic constructors. Probably most called from Bio::Structure::IO. Returns : a new Bio::Structure::Model object

chain()
Title : chain Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :

add_chain()
Title : add_chain Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :

entry()
Title : entry Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :

id()
Title : id Usage : $model->id("model 5") Function: Gets/sets the ID for this model Returns : the ID Args : the ID

residue()
Title : residue Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :

add_residue()
Title : add_residue Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :

_remove_chains()
Title : _remove_chains Usage : Function: Removes the chains attached to a Model. Tells the chains they don't belong to this Model any more Returns : Args :

_remove_entry()
Title : _remove_entry Usage : Function: Removes the Entry this Model is atttached to. Returns : Args :

_create_default_chain()
Title : _create_default_chain Usage : Function: Creates a default Chain for this Model. Typical situation in an X-ray structure where there is only one chain Returns : Args :

_grandparent()
Title : _grandparent Usage : Function: get/set a symbolic reference to our grandparent Returns : Args :