Bio::Tools::FootPrinter - DESCRIPTION of Object use Bio::Tools::FootPrinter; my $tool = Bio::Tools::FootPrinter->new(-file=>"footprinter.out"); while (my $result = $tool->next_feature){ foreach my $feat($result->sub_SeqFeature){ print $result->seq_id."\t".$feat->start."\t".$feat->end."\t".$feat->seq->seq."\n"; } } A parser for FootPrinter output

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/ Email shawnh@fugu-sg.org Describe contact details here Additional contributors names and emails here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new
Title : new Usage : my $obj = new Bio::Tools::FootPrinter(); Function: Builds a new Bio::Tools::FootPrinter object Returns : Bio::Tools::FootPrinter Args : -fh/-file => $val, # for initing input, see Bio::Root::IO

next_feature
Title : next_feature Usage : my $r = $footprint->next_feature Function: Get the next feature from parser data Returns : L<Bio::SeqFeature::Generic> Args : none

_add_feature
Title : _add_feature Usage : $footprint->_add_feature($feat) Function: Add feature to array Returns : none Args : none

_parse_predictions
Title : _parse_predictions Usage : my $r = $footprint->_parse_predictions Function: do the parsing Returns : none Args : none

_predictions_parsed
Title : _predictions_parsed Usage : $footprint->_predictions_parsed(1) Function: Get/Set for whether predictions parsed Returns : 1/0 Args : none

_parse
Title : _parse Usage : $footprint->_parse($name,$seq,$pattern) Function: do the actual parsing Returns : L<Bio::SeqFeature::Generic> Args : none