OMIMentryAllelicVariant - Representation of a allelic variant of the OMIM database use Bio::Phenotype::OMIM::OMIMentryAllelicVariant; $av = Bio::Phenotype::OMIM::OMIMentryAllelicVariant->new( -number => ".0001", -title => "ALCOHOL INTOLERANCE", -symbol => "ALDH2*2", -description => "The ALDH2*2-encoded ...", -aa_ori => "GLU", -aa_mut => "LYS", -position => 487, -additional_mutations => "IVS4DS, G-A, +1" ); This class models the allelic variant of the OMIM database. This class is intended to be used together with a OMIM entry class.

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bio.perl.org http://bugzilla.bioperl.org/ Christian M. Zmasek Email: czmasek@gnf.org or cmzmasek@yahoo.com WWW: http://www.genetics.wustl.edu/eddy/people/zmasek/ Address: Genomics Institute of the Novartis Research Foundation 10675 John Jay Hopkins Drive San Diego, CA 92121 The rest of the documentation details each of the object methods.

new
Title : new Usage : $av = Bio::Phenotype::OMIM::OMIMentryAllelicVariant->new( -number => ".0001", -title => "ALCOHOL INTOLERANCE", -symbol => "ALDH2*2", -description => "The ALDH2*2-encoded ...", -aa_ori => "GLU", -aa_mut => "LYS", -position => 487, -additional_mutations => "IVS4DS, G-A, +1" ); Function: Creates a new OMIMentryAllelicVariant object. Returns : A new OMIMentryAllelicVariant object. Args : -number => the OMIM allelic variant number -title => the title -symbol => a symbol -description => a description -aa_ori => the original amino acid -aa_mut => the mutated amino acid -position => the position of the mutation -additional_mutations => free form description of additional mutations

init
Title : init() Usage : $av->init(); Function: Initializes this OMIMentryAllelicVariant to all "". Returns : Args :

number
Title : number Usage : $av->number( ".0001" ); or print $av->number(); Function: Set/get for the OMIM allelic variant number of this OMIMentryAllelicVariant. Returns : The OMIM allelic variant number. Args : The OMIM allelic variant number (optional).

title
Title : title Usage : $av->title( "ALCOHOL INTOLERANCE" ); or print $av->title(); Function: Set/get for the title of this OMIMentryAllelicVariant. Returns : The title. Args : The title (optional).

symbol
Title : symbol Usage : $av->symbol( "ALDH2*2" ); or print $av->symbol(); Function: Set/get for the symbol of this OMIMentryAllelicVariant. Returns : A symbol. Args : A symbol (optional).

description
Title : description Usage : $av->description( "The ALDH2*2-encoded protein has a change ..." ); or print $av->description(); Function: Set/get for the description of this OMIMentryAllelicVariant. Returns : A description. Args : A description (optional).

aa_ori
Title : aa_ori Usage : $av->aa_ori( "GLU" ); or print $av->aa_ori(); Function: Set/get for the original amino acid(s). Returns : The original amino acid(s). Args : The original amino acid(s) (optional).

aa_mut
Title : aa_mut Usage : $av->aa_mut( "LYS" ); or print $av->aa_mut(); Function: Set/get for the mutated amino acid(s). Returns : The mutated amino acid(s). Args : The mutated amino acid(s) (optional).

position
Title : position Usage : $av->position( 487 ); or print $av->position(); Function: Set/get for the position of the mutation. Returns : The position of the mutation. Args : The position of the mutation (optional).

additional_mutations
Title : additional_mutations Usage : $av->additional_mutations( "1-BP DEL, 911T" ); or print $av->additional_mutations(); Function: Set/get for free form description of (additional) mutation(s). Returns : description of (additional) mutation(s). Args : description of (additional) mutation(s) (optional).

to_string
Title : to_string() Usage : print $av->to_string(); Function: To string method for OMIMentryAllelicVariant objects. Returns : A string representations of this OMIMentryAllelicVariant. Args :