Bio::Graphics::Glyph::graded_segments - The "graded_segments" glyph See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>. This is identical to the "alignment" glyph, and is used for drawing features that consist of discontinuous segments. The color intensity of each segment is proportionate to the score.

OPTIONS
The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation. Option Description Default ------ ----------- ------- -fgcolor Foreground color black -outlinecolor Synonym for -fgcolor -bgcolor Background color turquoise -fillcolor Synonym for -bgcolor -linewidth Line width 1 -height Height of glyph 10 -font Glyph font gdSmallFont -connector Connector type 0 (false) -connector_color Connector color black -label Whether to draw a label 0 (false) -description Whether to draw a description 0 (false) -hilite Highlight color undef (no color) In addition, the alignment glyph recognizes the following glyph-specific options: Option Description Default ------ ----------- ------- -max_score Maximum value of the Calculated feature's "score" attribute -min_score Minimum value of the Calculated feature's "score" attribute -vary_fg Vary the foreground color as 0 (false) well as the background If max_score and min_score are not specified, then the glyph will calculate the local maximum and minimum scores at run time. Since many scoring functions are exponential you may wish to take the log of your scores before passing them to this glyph. Please report them. Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments, Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD Lincoln Stein <lstein@cshl.org> Copyright (c) 2001 Cold Spring Harbor Laboratory This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.