Bio::DB::GFF::Aggregator::coding -- The Coding Region Aggregator use Bio::DB::GFF; # Open the sequence database my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql', -dsn => 'dbi:mysql:elegans42', -aggregator => ['coding'], ); ------------------------------------------------------------------------ Aggregator method: coding Main method: mRNA Sub methods: CDS ------------------------------------------------------------------------ Bio::DB::GFF::Aggregator::coding aggregates "CDS" features into a feature called "coding" and was written to be compatible with the Sequence Ontology canonical gene. The CDS features are expected to belong to a parent of type "mRNA," but the aggregator will work even if this isn't the case.

method
Title : method Usage : $aggregator->method Function: return the method for the composite object Returns : the string "processed_transcript" Args : none Status : Public

part_names
Title : part_names Usage : $aggregator->part_names Function: return the methods for the sub-parts Returns : the list (CDS cds) Args : none Status : Public

main_name
Title : main_name Usage : $aggregator->main_name Function: return the method for the main component Returns : the string "mRNA" Args : none Status : Public None reported. Bio::DB::GFF, Bio::DB::GFF::Aggregator Lincoln Stein <lstein@cshl.org>. Copyright (c) 2001 Cold Spring Harbor Laboratory. This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.