Bio::Tools::PrositeScan - Parser for ps_scan result use Bio::Tools::PrositeScan; my $factory = Bio::Tools::PrositeScan->new( -file => 'out.PrositeScan' ); while(my $match = $factory->next_prediction){ # $match is of Bio::SeqFeature::FeaturePair my $q_id = $fatch->feature1->seq_id; my $h_id = $fatch->feature2->seq_id; } This is the parser of the output of ps_scan program. It takes either a file handler or a file name, and returns a Bio::SeqFeature::FeaturePair object. Juguang Xiao, juguang@tll.org.sg

new
Title : new Usage : Bio::Tools::PrositeScan->new(-file => 'out.PrositeScan'); Bio::Tools::PrositeScan->new(-fh => \*FH); Returns : L<Bio::Tools::PrositeScan>

next_prediction
Title : new Usage : while($result = $factory->next_prediction){ ; } Returns : a Bio::SeqFeature::FeaturePair object