heterogeneity_test - a test for distinguishing between selection and population expansion. heterogenetity_test -mut_1/--mutsyn synonymous_mut_count -mut_2/--mutnon nonsyn_mut_count -s/--smaplesize sample_size [-i/--iterations iterations] [-o/--observed observed_D] [-v/--verbose] [--silent ] [-m/--method tajimaD or fuD] [--precision]

DESCRIPTION
This is an implementation of the Heterogenetity test as described in Hahn MW, Rausher MD, and Cunningham CW. 2002. Genetics 161(1):11-20.

OPTIONS
Options in brackets above are optional -s or --samplesize samplesize -mut_1 or --mutsyn synonymous mutation count -mut_2 or --mutnon nonsynonmous mutation count -i or --iterations number of iterations -o or --observed observed D -m or --method tajimaD or fuD for Tajima's D or Fu and Li's D -v or --verbose print out extra verbose messages --silent Be extra quiet --precision Level of precision - specify the number of digits (default 4)

AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
For more information contact: Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-bioperl-dot-org>