Bio::Search::Result::WABAResult - Result object for WABA alignment output # use this object exactly as you would a GenericResult # the only extra method is query_database which is the # name of the file where the query sequence came from This object is for WABA result output, there is little difference between this object and a GenericResult save the addition of one method query_database. Expect many of the fields for GenericResult to be empty however as WABA was not intended to provide a lot of extra information other than the alignment.

Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/MailList.shtml - About the mailing lists

Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/ Email jason@bioperl.org Describe contact details here Additional contributors names and emails here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new
Title : new Usage : my $obj = new Bio::Search::Result::WABAResult(); Function: Builds a new Bio::Search::Result::WABAResult object Returns : Bio::Search::Result::WABAResult Args : -query_database => "name of the database where the query came from"

query_database
Title : query_database Usage : $obj->query_database($newval) Function: Data field for the database filename where the query sequence came from Returns : value of query_database Args : newvalue (optional)

All other methods are inherited from Bio::Search::Result::GenericResult
See the Bio::Search::Result::GenericResult for complete documentation of the rest of the methods that are available for this module.