Bio::Matrix::IO::scoring - A parser for PAM/BLOSUM matricies use Bio::Matrix::IO; my $parser = new Bio::Matrix::IO(-format => 'scoring', -file => 'BLOSUM50'); my $matrix = $parser->next_matrix; Describe the object here

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.bioperl.org/ Email jason-at-bioperl-dot-org Describe contact details here Additional contributors names and emails here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new
Title : new Usage : my $obj = new Bio::Matrix::IO::scoring(); Function: Builds a new Bio::Matrix::IO::scoring object Returns : an instance of Bio::Matrix::IO::scoring Args :

next_matrix
Title : next_matrix Usage : my $matrux = $parser->next_matrix Function: parses a scoring matrix (BLOSUM,PAM styles) Returns : L<Bio::Matrix::Scoring> Args : none

write_matrix
Title : write_matrix Usage : $matio->write_matrix($matrix) Function: Write out a matrix in the BLOSUM/PAM format Returns : none Args : L<Bio::Matrix::Scoring>