extract_feature_seq - extract the corresponding sequence for a specified feature type pairwise_kaks.PLS -i file --format genbank --feature=CDS -o output.fa This script will extract the sequence for all the features you specify.

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: http://bugzilla.bioperl.org/ Jason Stajich <jason@bioperl.org>