Bio::Tools::Tmhmm - parse TmHMM output (transmembrane HMM) use Bio::Tools::Tmhmm; my $parser = new Bio::Tools::Tmhmm(-fh =>$filehandle ); while( my $tmhmm_feat = $parser->next_result ) { #do something #eg push @tmhmm_feat, $tmhmm_feat; } Parser for Tmhmm output

Mailing Lists
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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bioperl.org http://bugzilla.bioperl.org/ Email savikalpa@fugu-sg.org The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new
Title : new Usage : my $obj = new Bio::Tools::Tmhmm(); Function: Builds a new Bio::Tools::Tmhmm object Returns : Bio::Tools::Tmhmm Args : -fh/-file => $val, # for initing input, see Bio::Root::IO

next_result
Title : next_result Usage : my $feat = $Tmhmm->next_result Function: Get the next result set from parser data Returns : Bio::SeqFeature::Generic Args : none

create_feature
Title : create_feature Usage : obj->create_feature(\%feature) Function: Internal(not to be used directly) Returns : A Bio::SeqFeature::Generic object Args :

_seqname
Title : _seqname Usage : obj->_seqname($seqname) Function: Internal(not to be used directly) Returns : Args : seqname