Bio::Coordinate::MapperI - Interface describing coordinate mappers # not to be used directly MapperI defines methods for classes capable for mapping locations between coordinate systems.

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Reporting Bugs
report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web: bioperl-bugs@bio.perl.org http://bugzilla.bioperl.org/ Email: heikki@ebi.ac.uk Address: EMBL Outstation, European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton Cambs. CB10 1SD, United Kingdom Additional contributors names and emails here The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

in
Title : in Usage : $obj->in('peptide'); Function: Set and read the input coordinate system. Example : Returns : value of input system Args : new value (optional), Bio::LocationI

out
Title : out Usage : $obj->out('peptide'); Function: Set and read the output coordinate system. Example : Returns : value of output system Args : new value (optional), Bio::LocationI

swap
Title : swap Usage : $obj->swap; Function: Swap the direction of mapping: input <-> output) Example : Returns : 1 Args :

test
Title : test Usage : $obj->test; Function: test that both components are of same length Example : Returns : ( 1 | undef ) Args :

map
Title : map Usage : $newpos = $obj->map($loc); Function: Map the location from the input coordinate system to a new value in the output coordinate system. Example : Returns : new value in the output coordiante system Args : Bio::LocationI

return_match
Title : return_match Usage : $obj->return_match(1); Function: A flag to turn on the simplified mode of returning only one joined Match object or undef Example : Returns : boolean Args : boolean (optional)