Bio::Tools::Run::PiseApplication::pepwheel # Bio::Tools::Run::PiseApplication::pepwheel Bioperl class for: PEPWHEEL Shows protein sequences as helices (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/pepwheel.html for available values): pepwheel (String) init (String) sequence (Sequence) sequence -- Protein [single sequence] (-sequence) pipe: seqfile wheel (Switch) Plot the wheel (-wheel) steps (Integer) Number of steps (-steps) turns (Integer) Number of turns (-turns) amphipathic (Switch) Prompt for amphipathic residue marking (-amphipathic) squares (String) Mark as squares (-squares) diamonds (String) Mark as diamonds (-diamonds) octags (String) Mark as octagons (-octags) data (Switch) Display as data (-data) outfile (OutFile) outfile (-outfile) graph (Excl) graph [device to be displayed on] (-graph) auto (String) psouput (String)

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.bioperl.org/ Catherine Letondal (letondal@pasteur.fr) Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved. This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. This software is provided "as is" without warranty of any kind. http://bioweb.pasteur.fr/seqanal/interfaces/pepwheel.html Bio::Tools::Run::PiseApplication Bio::Tools::Run::AnalysisFactory::Pise Bio::Tools::Run::PiseJob

new
Title : new() Usage : my $pepwheel = Bio::Tools::Run::PiseApplication::pepwheel->new($location, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::pepwheel object. This method should not be used directly, but rather by a Bio::Tools::Run::AnalysisFactory::Pise instance. my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new(); my $pepwheel = $factory->program('pepwheel'); Example : - Returns : An instance of Bio::Tools::Run::PiseApplication::pepwheel.