Bio::Tools::Run::PiseApplication::extractfeat # Bio::Tools::Run::PiseApplication::extractfeat Bioperl class for: EXTRACTFEAT Extract features from a sequence (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/extractfeat.html for available values): extractfeat (String) init (String) sequence (Sequence) sequence -- any [sequences] (-sequence) pipe: seqsfile before (Integer) Amount of sequence before feature to extract (-before) after (Integer) Amount of sequence after feature to extract (-after) source (String) Source of feature to display (-source) type (String) Type of feature to extract (-type) sense (Integer) Sense of feature to extract (-sense) minscore (Float) Minimum score of feature to extract (-minscore) maxscore (Float) Maximum score of feature to extract (-maxscore) tag (String) Tag of feature to extract (-tag) value (String) Value of feature tags to extract (-value) join (Switch) Output introns etc. as one sequence (-join) featinname (Switch) Append type of feature to output sequence name (-featinname) outseq (OutFile) outseq (-outseq) pipe: seqfile outseq_sformat (Excl) Output format for: outseq auto (String)

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.bioperl.org/ Catherine Letondal (letondal@pasteur.fr) Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved. This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. This software is provided "as is" without warranty of any kind. http://bioweb.pasteur.fr/seqanal/interfaces/extractfeat.html Bio::Tools::Run::PiseApplication Bio::Tools::Run::AnalysisFactory::Pise Bio::Tools::Run::PiseJob

new
Title : new() Usage : my $extractfeat = Bio::Tools::Run::PiseApplication::extractfeat->new($location, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::extractfeat object. This method should not be used directly, but rather by a Bio::Tools::Run::AnalysisFactory::Pise instance. my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new(); my $extractfeat = $factory->program('extractfeat'); Example : - Returns : An instance of Bio::Tools::Run::PiseApplication::extractfeat.