Bio::Tools::Run::PiseApplication::drawgram # Bio::Tools::Run::PiseApplication::drawgram Bioperl class for: Phylip drawgram - Plots a cladogram- or phenogram-like rooted tree (Felsenstein) References: Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle. Felsenstein, J. 1989. PHYLIP -- Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166. Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/drawgram.html for available values): drawgram (String) treefile (InFile) Tree File pipe: phylip_tree screen_type (String) plotter (Excl) Which plotter or printer will the tree be drawn on xres (Float) X resolution yres (Float) Y resolution laserjet_resolution (Excl) Laserjet resolution pcx_resolution (Excl) Paintbrush PCX resolution screen (String) grows (Excl) Tree grows... tree_style (Excl) Tree style branch_lengths (Switch) Use branch lengths horizontal_margins (Float) Horizontal margins vertical_margins (Float) Vertical margins scale (Float) Scale of branch length (default: Automatically rescaled) depth (Float) Depth/Breadth of tree stem (Float) Stem-length/tree-depth character_height (Float) Character ht / tip space ancestral (Excl) Ancestral nodes font (String) Font (PostScript only) tops (String) topict (String) confirm (String)

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Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.bioperl.org/ Catherine Letondal (letondal@pasteur.fr) Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved. This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. This software is provided "as is" without warranty of any kind. http://bioweb.pasteur.fr/seqanal/interfaces/drawgram.html Bio::Tools::Run::PiseApplication Bio::Tools::Run::AnalysisFactory::Pise Bio::Tools::Run::PiseJob

new
Title : new() Usage : my $drawgram = Bio::Tools::Run::PiseApplication::drawgram->new($location, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::drawgram object. This method should not be used directly, but rather by a Bio::Tools::Run::AnalysisFactory::Pise instance. my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new(); my $drawgram = $factory->program('drawgram'); Example : - Returns : An instance of Bio::Tools::Run::PiseApplication::drawgram.