Bio::Tools::Run::PiseApplication::CSR # Bio::Tools::Run::PiseApplication::CSR Bioperl class for: CSR Maximal Common 3D Substructure Searching (M.Petitjean) References: M.Petitjean, Interactive Maximal Common 3D Substructure Searching with the Combined SDM/RMS Algorithm. Comput.Chem.1998,22[6],pp.463-465. Parameters: CSR (String) param (Results) endparams (String) pdbfile (InFile) File containing both molecules pipe: pdbfile file_format (Excl) Input file format imol1 (Integer) Position of the 1st molecule in the file (IMOL1) imol2 (Integer) Position of the 2d molecule in the file (IMOL2) itermx (Integer) How many iterations (ITERMX) cutoff (Excl) Cutoff distance (CUT-OFF DIST) substructure (OutFile) pdb_outfile (Results) pipe: pdbfile

new
Title : new() Usage : my $CSR = Bio::Tools::Run::PiseApplication::CSR->new($remote, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::CSR object. This method should not be used directly, but rather by a Bio::Factory::Pise instance: my $factory = Bio::Factory::Pise->new(-email => 'me@myhome'); my $CSR = $factory->program('CSR'); Example : Returns : An instance of Bio::Tools::Run::PiseApplication::CSR.