Bio::Tools::Run::PiseApplication::drawtree # Bio::Tools::Run::PiseApplication::drawtree Bioperl class for: Phylip drawtree - Plots an unrooted tree diagram (Felsenstein) References: Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle. Felsenstein, J. 1989. PHYLIP -- Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166. Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/drawtree.html for available values): drawtree (String) treefile (InFile) Tree File pipe: phylip_tree screen_type (String) plotter (Excl) Which plotter or printer will the tree be drawn on xxres (Float) X resolution xyres (Float) Y resolution laserjet_resolution (Excl) Laserjet resolution pcx_resolution (Excl) Paintbrush PCX resolution preview (String) branch_lengths (Switch) Use branch lengths angle (Excl) Angle of labels fixed_angle (Float) Fixed angle: Are the labels to be plotted vertically (90), horizontally (0), or downwards (-90)? rotation (Float) Rotation of tree (in degrees from 360 to -360) arc (Float) Angle of arc for tree (in degrees from 0 to 360) iterate (Excl) Iterate to improve tree scale (Float) Scale of branch length (default: Automatically rescaled) horizontal_margins (Float) Horizontal margins vertical_margins (Float) Vertical margins character_height (Float) Relative character height font (String) Font (PostScript only) tops (String) topict (String) toxbm (String) confirm (String)

Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/MailList.shtml - About the mailing lists

Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: http://bugzilla.bioperl.org/ Catherine Letondal (letondal@pasteur.fr) Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved. This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. This software is provided "as is" without warranty of any kind. http://bioweb.pasteur.fr/seqanal/interfaces/drawtree.html Bio::Tools::Run::PiseApplication Bio::Tools::Run::AnalysisFactory::Pise Bio::Tools::Run::PiseJob

new
Title : new() Usage : my $drawtree = Bio::Tools::Run::PiseApplication::drawtree->new($location, $email, @params); Function: Creates a Bio::Tools::Run::PiseApplication::drawtree object. This method should not be used directly, but rather by a Bio::Tools::Run::AnalysisFactory::Pise instance. my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new(); my $drawtree = $factory->program('drawtree'); Example : - Returns : An instance of Bio::Tools::Run::PiseApplication::drawtree.