// ==========================================================================
//                 SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2010, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
//     * Redistributions of source code must retain the above copyright
//       notice, this list of conditions and the following disclaimer.
//     * Redistributions in binary form must reproduce the above copyright
//       notice, this list of conditions and the following disclaimer in the
//       documentation and/or other materials provided with the distribution.
//     * Neither the name of Knut Reinert or the FU Berlin nor the names of
//       its contributors may be used to endorse or promote products derived
//       from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
// ==========================================================================
// Umbrella Header for the sequence_journaleded module.
// ==========================================================================

#ifndef SEQAN_HEADER_SEQUENCE_JOURNALED_H
#define SEQAN_HEADER_SEQUENCE_JOURNALED_H

// ============================================================================
// Prerequisites.
// ============================================================================

#include <algorithm>
#include <map>
#include <ostream>
#include <string>
#include <sstream>

#include <seqan/basic.h>
#include <seqan/sequence.h>

// ============================================================================
// Forwards.
// ============================================================================

#include <seqan/sequence_journaled/sequence_journaled_forwards.h>

#ifdef SEQAN_SWITCH_USE_FORWARDS
#include <seqan/sequence_journaled/sequence_journaled_generated_forwards.h>
#endif

// ============================================================================
// Journaled Sequences.
// ============================================================================

#include <seqan/sequence_journaled/journal_entry.h>
#include <seqan/sequence_journaled/journal_entries_unbalanced_tree_node.h>
#include <seqan/sequence_journaled/journal_entries_unbalanced_tree.h>
#include <seqan/sequence_journaled/journal_entries_unbalanced_tree_iterator.h>
#include <seqan/sequence_journaled/journal_entries_sorted_array.h>
#include <seqan/sequence_journaled/sequence_journaled.h>
#include <seqan/sequence_journaled/sequence_journaled_iterator.h>

// ============================================================================
// Incremental Indices.
// ============================================================================

// TODO(holtgrew): Port back the incremental index stuff to the new code.

#endif  // SEQAN_HEADER_SEQUENCE_JOURNALED_H
