
SAGA FORMAT
alignement  1lcf_ref1.t_coffee_aln10 nseq=6 len=749
T_COFFEE ALIGNMENT
CPU TIME:163820



1lcf       -grrrsvqwcavsnpeatkcfqwqrnmrkv---rgppvsclkrdspiqci
trfe_rabit ----ktvrwcavndheaskcanfrdsmkkvlpedgpriicvkkasyldci
trf2_salsa ------vkwcvkseqelrkchdlaakv--------aefscvrkdgsfeci
trfe_xenla --kekqvrwcvksnselkkckdlvdtckn----keiklscveksntdecs
trfm_human -----evrwcatsdpeqhkcgnmseafreagi--qpsllcvrgtsadhcv
1aov       appkttvrwctissaeekkcnslkdhmqq----ervtlscvqkatyldci

1lcf       qaiaenradavtldggfiyeaglapyklrpvaaevygterqprthyyava
trfe_rabit kaiaaheadavtldaglvheagltpnnlkpvvaefygskenpktfyyava
trf2_salsa qaikggeadaitldggdiytagltnyglqpiiaedyge--dsdtcyyava
trfe_xenla taiqedhadaicvdggdvykgslqpynlkpimaenygshtetdtcyyava
trfm_human qliaaqeadaitldggaiyeag-kehglkpvvgevydqevg--tsyyava
1aov       kaisnneadaisldggqvfeaglapyklkpiaaevyersggsttsyyava

1lcf       vvkkggsfqlnelqglkschtglrrtagwnvpigtlrpf--lnwtgpp-e
trfe_rabit lvkkgsnfqlnelqgkkschtglgrsagwnipigllycd----lpepr-k
trf2_salsa vakkgtafgfktlrgkkschtglgksagwnipigtlvtesqirwagiedr
trfe_xenla vvkksskftfdelkdkkschtgigktagwniiiglllerkllkwagpdse
trfm_human vvrrsshvtidtlkgvkschtginrtvgwnvpvgylvesgrlsvmgcd--
1aov       vvkkgtdfmikdlrgktschtglgrsagwnipigtlihrediewegiesg

1lcf       pieaavarffsascvpgadkgqfp-nlcrlcagtg--enkcafssqepyf
trfe_rabit plekavasffsgscvpcadgadfp-qlcqlcpg-------cgcssvqpyf
trf2_salsa pvesavsdffnascapgatmgs---klcqlckgd------csrshkepyy
trfe_xenla twrnavskffkascvpgake-p---klsqlcagik--ehkcsrsnnepyy
trfm_human -vlkavsdyfggscvpgagetsyseslcrlcrgdssgegvcdkspleryy
1aov       iseqavakffsascvpgatieq---klcrqckgda--ktkclr--ngpys

1lcf       sysgafkclkdgagdvafirestvfedl-----sdeae---rdeyellcp
trfe_rabit gysgafkclkdglgdvafvkqetifenl-----pskde---rdqyellcl
trf2_salsa dyagafqclkdgagdvafikplavpaa----------e---kasyellck
trfe_xenla nyagafkclqddqgdvafvkqstvpee----------f---hkdyellcp
trfm_human dysgafrclaegagdvafvkhstvlentdgktlpswgqallsqdfellcr
1aov       gysgafqclkdgkgdvafvkhttvqena-----p--ee---kdeyellcl

1lcf       dntrkpvdkfkdchlarvpshavvarsvngkedaiwnllrqaqekfgkdk
trfe_rabit dntrkpvdeyeqchlarvpshavvarsvdgkedliwellnqaqehfgkdk
trf2_salsa dgtrasidsyktchlarvpahavvsrkdpelanriynklvav--------
trfe_xenla dntrksikeykncnlakvpahavltrgrddkskdiieflqeaq------k
trfm_human dgsradvtewrqchlarvpahavvvra-dtdgglifrllnegqrlfsheg
1aov       dgsrqpvdsyktcnwarvaahavvard-dskiddiwsflgmqayslgvdt

1lcf       spkfqlfgsps-g---qkdllfkdsaigfsrvppridsglylgsgyftai
trfe_rabit sgdfqlfssph-----gknllfkdsaygffkvpprmdanlylgyeyvtav
trf2_salsa -kdfnlfssdgya---aknlmfkdsaqklvqlptttdsflylgaeymsti
trfe_xenla tqecklfsspv-w---grdlifkdsavsliplpssmdsflflgadyfqci
trfm_human s-sfqmfsseayg---qkdllfkdstselvpiatqt-yeawlgheylham
1aov       tsdfhlfgppgkkdpvlkdllfkdsaimlkrvpelmdsqlylgfeyysai

1lcf       qnlrks--eeevaarrarvvwcavgeqelrkcnqwsgls-----e--gsv
trfe_rabit rnlregicpdplqdeckavkwcalshherlkcdewsvts-----g--gli
trf2_salsa rslkks--qat-gassraikwcavghaekgkcdtwtinsf---adgeski
trfe_xenla qalkegv-keddsaaqvkvrwctqskaektkcddwttis-----g--gai
trfm_human kgllcd--pnrlp---pylrwcvlstpeiqkcgdmavafrrqrlk--pei
1aov       qslrkd--qltvgprenkiqwcavgkdekskcdrwsvvs-----n--gev

1lcf       tcssasttedcialvlkgeadamsldggyvytagkc-glvpvlaenyksq
trfe_rabit ecesaetpedciakimngeadamsldggyvyiagqc-glvpvlaenyes-
trf2_salsa scqdaptveecikkimrkeadaiavdggevytagkc-glvpvmveqyda-
trfe_xenla ecteastaeecivqilkgdadavtldggymytaglc-glvpvmgeyydq-
trfm_human qcvsakspqhcmeriqaeqvdavtlsgediytagkkyglvpaagehyape
1aov       ectilddnkdcivkitkgeadaisldggfvytagvc-glvpvvgesyede

1lcf       qssdpdpncvdr--pve-gylavavvrrsdt--sltwnsvkgkkschtav
trfe_rabit td------ckka--pee-gylsvavvkks-n-pdinwnnlegkkschtav
trf2_salsa dl------csap-geas-syyavavakkg-s--gltwktlkgkrschtgl
trfe_xenla ddltp---cqrscsqakgvyyavaivkkg-t--qvswsnlrgvktchtav
trfm_human dss-------n-------syyvvavvrrd-sshaftldelrgkrschagf
1aov       tq------cskdeeq-payyfavavvkks-s--aitwnnlqgkkschtav

1lcf       drtagwnipmgllfn----qtgsckf----deyfsqscapgsd-pr--sn
trfe_rabit drtagwnipmgllyn----rinhcrf----deffrqgcapgsq-kn--ss
trf2_salsa grtagwnipmglihq----etndcdf----tkyfskgcapgse-vg--sp
trfe_xenla grtagwnipvglits----etancdf----asyvgescapgsd-vk--sn
trfm_human gspagwdvpvgaliqrgfirpkdcdvltavseffnascvpvnnpknypss
1aov       grtagwnipmglihn----ktgscdf----ddyfsegcapgsp-pn--sr

1lcf       lcalcigdeqg----enkcvpnsneryygytgafrclaenagdvafvkdv
trfe_rabit lcelcigp--------svcapnnregyygytgafrclve-kgdvafvksq
trf2_salsa fcaqckgsgkarggdedrckarseeqyygytgafrclvedagdvafikht
trfe_xenla lcalcigdpeklserekkcspsaseayygysgafrclve-kgqvgfakht
trfm_human lcalcvgdeqg----rnkcvgnsqeryygyrgafrclvenagdvafvrht
1aov       lcklcqgsgen---llekcvasshekyygytgalrclve-qgdvafikhs

1lcf       tvlqntdgnnneawakdlkladfallcldgkrkpvtearschlamapnha
trfe_rabit tvlqntggrnsepwakdlkeedfellcldgtrkpvseahnchlakapnha
trf2_salsa ivpestdg-ngpdwakdlkssdfellcqdgttqpvtkfsechlakvpaha
trfe_xenla tvfentdgknpagwakdlksedfellcpdgsrapvtdykrcnlaevpaha
trfm_human tvfdntnghnsepwaaelrsedyellcpngaraevsqfaacnlaqippha
1aov       tvgenvsgsnkddwakgltrddfellctngkraktmdyktchlakvptha

1lcf       vvsrmdkve-rlkqvllhqqakfgrngsdcpdkfclfqset---knllfn
trfe_rabit vvsrkdkaa-cvkqklldlqveygntvadcsskfcmfhskt---kdllfr
trf2_salsa vitrpetrg-dvvsillelqakfgssgsd--ssfrmfqssv--eknllfk
trfe_xenla vvtlpdkre-qvakivvnqqslygrkgfq-kdifqmfqstg--gkdllfk
trfm_human vmvrpdtniftvyglldkaqdlfgddhn--kngfkmfdssnyhgqdllfk
1aov       vvarpekan-kirellegqeklfglhgte-kerfmmfqsqt---kdllfk

1lcf       dnteclarlhgkttyekylgpqyvagitnlkkcs--tsplleaceflrk
trfe_rabit ddtkclvdlrgkntyekylgadyikavsnlrkcs--tsrlleactfhk-
trf2_salsa dstkclqeipkgtkyqdflgkeymiamqslrkcsdstsdlekactfhs-
trfe_xenla dstqclleipskttmqeflgdkyhtavtslnkcs--tsrllaactf---
trfm_human datvravpvgekttyrgwlgldyvaalegmss---------qqcs----
1aov       altkclvklrqgitykeflgdeyyasvaslntcn--psdllqvctfled



