
SAGA FORMAT
alignement  1uky_ref3.t_coffee_aln10 nseq=25 len=256
T_COFFEE ALIGNMENT
CPU TIME:3254238



1uky       -pafspdqvsvifvlggpgagkgtqceklvkdysf--vhls-----agdl
kcy_dicdi  meks---kpnvvfvlggpgsgkgtqcanivrdfgw--vhls-----agdl
kad1_pig   -------kskiifvvggpgsgkgtqcekivqkygy--thls-----tgdl
kad_schma  -------kakvifvlggpgsgkgtqceklvqkfhf--nhls-----sgdl
kad_miclu  ----------rmllmgppgsgkgtqatriadklgi--vpis-----tgdi
1dvrA      --s-se-si-rmvligppgagkgtqapnlqerfha--ahla-----tgdm
kad_mycca  -----------imllgapgcgkgtqaeqlvnklnf--iqvs-----tgdl
kad_bacsu  -----------lvlmglpgagkgtqgerivedygi--phis-----tgdm
kadc_maize -----------vmisgapasgkgtqceliktkyql--ahis-----agdl
kad_giala  --r-kk-nlfklvllgapgagkgtqakhlvskysl--khis-----pgnl
kad_salty  -----------iillgapgagkgtqaqfimekygi--pqis-----tgdm
kad_lacla  -----------llimglpgagkgtqaefivknygv--nhis-----tgdm
kad_parde  -----------iillgppgagkgtqarrlidergl--vqls-----tgdm
1gky       --------srpivisgpsgtgkstllkklfaeyp-dsfgfs-----vsst
kgua_bovin ---------rpvvlsgpsgagkstllkkllqehg-sifgfs-----vsht
kgua_ecoli ------------ivsapsgagkssliqallktqplydtqvs-----vsht
kgua_mycge ---------rifvitgpsgvgkstlvkalldhfk-eqlfys-----isat
dlg1_drome --------trpviilgp-l--kdrinddliseyp-dkfgsc-----vpht
em55_human --------rktlvligasgvgrshiknallsqnp-ekfvyp-----vpyt
va57_vaccv ---------ksiilsgpsglgktaiakrlwey-----fgfv-----vsht
1bif       -------cptlivmvglpargktyiskkltrylnf--igvptrefnvgqy
f26l_human --------ptmvimvglpargktyistkltrylnw--igtptkvfnlgqy
f26h_bovin --------ptlivmiglpargktyvskkltrylnw--igvptkvfnlgvy
f26_yeast  -----------vimvglpargksfisqkiirylsw--lsikakcfnvgny
6p21_yeast ----------vivmvglpatgksfitnklsrflny--slyyckvfnvgnt

1uky       lraeqgra--gsqygelikncike-gqivpqeitlallrnaisdnvkank
kcy_dicdi  lrqeq-qs--gskdgemiatmikn-geivpsivtvkllknaidan---qg
kad1_pig   lraev-ss--gsargkmlseimek-gqlvpletvldmlrdamvakvdt-s
kad_schma  lraev-qs--gspkgkelkammer-gelvplevvlallkeaminwltk-i
kad_miclu  frhnv-ks--mtplgveakryidn-gdfvpdevtnrmvadriaqada--e
1dvrA      lrsqi-ak--gtqlgleakkimdq-gglvsddimvnmikdeltnnpac-k
kad_mycca  mrkei-sl--nttlglkcqeymna-gkyvpdqivnqivnqflqynnd---
kad_bacsu  fraam-ke--etplgleaksyidk-gelvpdevtigivkerlgkddc--e
kadc_maize lraei-aa--gsengkrakefmek-gqlvpdeivvnmvkerlrqpdaq-e
kad_giala  lreem-nr--nspitaqikdyvsk-gqlvpdsiviklienhiatig---d
kad_salty  lraav-ks--gselgkqakdimda-gklvtdelvialvkeriaqedc--r
kad_lacla  fraam-kn--etemgklaksfidk-gelvpdevtngivkerlaqddik-a
kad_parde  lrear-ss--gtemgkrvaevmdr-gelvtdeiviglireklgqgg----
1gky       trtpr-a---gevngkd-ynfvs--vdefksmiknnefiewaq------f
kgua_bovin trdpr-p---geengkd-yyfvt--revmqrdiaagdfiehae------f
kgua_ecoli trqpr-p---gevhgeh-yffvn--hdefkemisrdaflehae------v
kgua_mycge trkkr-i---sekegid-yffkd--kdefenlikqdafiewac------y
dlg1_drome trpkr-e---yevdgrd-yhfvss-reqmerdiqnhlfieagq------y
em55_human trppr-k---seedgke-yhfis--teemtrnisaneflefgs------y
va57_vaccv trfpr-p---meregvd-yhyvn--reaiwkgiaagnflehte------f
1bif       rrdmv-kt--y--ksfefflpdneeglkirkqcalaalndvrkflseegg
f26l_human rreav-s---y--knyefflpdnmealqirkqcalaalkdvhnylsheeg
f26h_bovin rrqav-ks--y--ksydffrhdneeamkirkqcalvalkdvkaylteesg
f26_yeast  rrdvs-gn--v-pmdaeffnfentdnfklrelaaqnaikdivnfftkedg
6p21_yeast rrkfa-kehglkdqdskffepknadstrlrdkwamdtldelldyllegsg

1uky       hkflidgfprkmdqaisfer---di---veskfilffdcpedimlerlle
kcy_dicdi  knflvdgfprneennnsweenmkdf---vdtkfvlffdcpeevmtqrllk
kad1_pig   kgflidgyprevkqgeefer---ki---gqptlllyvdagpetmtkrllk
kad_schma  vislsirypreldqgikfek---ev---cpclcvinfdvseevmrkrllk
kad_miclu  hgflldgyprtkgqvealdamlaeag--qslsavvelevpdeelverllk
1dvrA      ngfilvgfprtipqaekldqmlkeqg--tplekaielkvddellvaritg
kad_mycca  -klifdgyprtleqakllekmldlyn--kkidyvfyidvneqilikritn
kad_bacsu  rgflldgfprtvaqaealeeileeyg--kpidyvinievdkdvlmerltg
kadc_maize ngwlldgyprsysqamalet-l---e--irpdtfilldvpdellvervvg
kad_giala  snwlldgfprsesqaaalrasp---d--lfpthivelkvdqeavvqrlgg
kad_salty  ngflldgfprtipqadamke----ag--ivvdyvlefdvpdelivdrivg
kad_lacla  sgflldgyprtidqahaldtmleelg--ikldavvnivvnpnilvdrlsg
kad_parde  kgfifdgfprtlaqadalqalmaemd--qridaviemrvddaalvsrisg
1gky       sgnyy-gs--tvasvk---qvsks-g------ktcildidmqg-vksvka
kgua_bovin sgnly-gt--skaavr---avqam-n------ricvldvdlqg-vrnikk
kgua_ecoli fgnyy-gt--sreaie---qvlat-g------vdvfldidwqg-aqqirq
kgua_mycge nnhyy-gt--lksqae---qaiks-g------inlmleieyqg-alqvks
dlg1_drome ndnly-gt--svasvr---evaek-g------khcildvsgna-ikrlqv
em55_human qgnmf-gt--kfetvh---qihkq-n------kiaildiepqt-lkivrt
va57_vaccv lgniy-gt--sktavn---taain-n------ricvmdlnidg-vrslkn
1bif       hvavfdatnttrerramifnfgeqng--yktffvesicvdpeviaaniv-
f26l_human hvavfdatnttrerrslilqfakehg--ykvffiesicndpgiiaenir-
f26h_bovin qiavfdatnttrerrdlilnfaeens--fkvffvesvcddpdviaanil-
f26_yeast  svavfdatnstrkrrkwlkdiceknn--iqpmfleswsndheliinnak-
6p21_yeast svgifdatntsrerrknvlarirkrsphlkvlflesvcsdhalvqknir-

1uky       r---g--------------k------------tsgrsddniesikkrfnt
kcy_dicdi  r---g--------------e------------ssgrsddniesikkrfnt
kad1_pig   r---g--------------e------------tsgrvddneetikkrlet
kad_schma  r---a--------------e------------tsnrvddneetivkrfrt
kad_miclu  r-----------------ae------------iegraddtqeviehrldl
1dvrA      r-lihpasgrsyhkifnppkedmkddvtg-ealvqisddnadalkkrlaa
kad_mycca  r-lvcplckasfnletrkpkqeglcdfdn-tklvkrsddsldkvkirlqt
kad_bacsu  r-ricsvcgttyhlvfnppktpgicdkdgg-elyqraddneetvskrlev
kadc_maize r-rldpvtgkiyhlkysppene---eia--srltqrfddteekvklrlet
kad_giala  r-rfdpitgntyhiiydppp-p---dia--drvvvrtddredvirerfrv
kad_salty  r-rvhaasgrvyhvkfnppkvegkddvtg-edlttrkddqeetvrkrlve
kad_lacla  r-yicrncgatyhkifnptkvegtcdvcgshdlyqraddvpetvknrldv
kad_parde  r-fthgncgevygdvtkptkepgkcdvcgstdlrrraddneeslktrlme
1gky       ipelna-----rflfiappsve---dlk--krlegrgteteesinkrlsa
kgua_bovin t-dlrp-----iyifvqppsld---vle--qrlrqrnteteeslakrlaa
kgua_ecoli k-mpha-----rsifilppski---eld--rrlrgrgqdseeviakrmaq
kgua_mycge kyphnv-----vlifikppsmq---ell--krlkkrndedettikkrleq
dlg1_drome a-qlyp-----vavfikpksvd---svm--emnrrmteeqakktyeraik
em55_human a-elsp-----fivfiaptdqg---tqt--ealqqlqkdse------a--
va57_vaccv t-ylmp-----ysvyirptslk---mve--tklrcrnteandeihrrvil
1bif       ------------qvklgspdyvnrd-----------sdeatedfmrriec
f26l_human ------------qvklgspdyidcd-----------rekvledflkriec
f26h_bovin ------------evkvsspdypern-----------renvmddflkriec
f26_yeast  ------------digstspdyense-----------phvaeadflerirq
6p21_yeast -------------lklfgpdykgkd-----------pesslkdfksrlan

1uky       fketsmpviey-fet---------ksk---vvrvrcd-rsvedvykdvqd
kcy_dicdi  fnvqtklvidh-ynk---------fdk---vkiipan-rdvnevyndven
kad1_pig   yykatepviaf-yek---------rgi---vrkvnae-gsvddvfsqvct
kad_schma  fneltkpvieh-ykq---------qnk---vitidas-gtvdaifdkvnh
kad_miclu  yhretesviqe-yve---------rgi---varvdgt-gqiddvterllq
1dvrA      yhaqtepivdf-ykk---------tgi---wagvdas-qppatvwadiln
kad_mycca  ykeqtlplidy-fkt---------nsk---fieikadnlsaeqvfnqikg
kad_bacsu  nmkqtqplldf-yse---------kgy---lanvngq-qdiqdvyadvkd
kadc_maize yyqniesllst-y-e---------n-i---ivkvqgd-atvdavfakide
kad_giala  yaen-kdlvdk-vfn---------h-s---vvsincegqtidevslqldr
kad_salty  yhqmtapligy-yqk------eaeagntk-yakvdgt-qavadvraalek
kad_lacla  nikesapiieh-yte---------lgl---vkniege-qeisqvtddikk
kad_parde  yykktspligy-yyv---------kgn---lnpvdgl-aeidevaaqvak
1gky       aqaelaya-e--------------tga---hdkviv-nddldkaykelkd
kgua_bovin aradmesske--------------pgl---fdliiv-ndsldkaywalke
kgua_ecoli avaemshyae--------------------ydyliv-nddfdtaltdlkt
kgua_mycge akiefqqidn--------------------fkyvvt-nkefdktlnelks
dlg1_drome meqefge-------------------y---ftgvvq-gdtieeiyskvks
em55_human irsqyah-------------------y---fdlslv-nngvdetlkklqe
va57_vaccv aktdmdeane--------------agl---fdtiii-eddvnlayskliq
1bif       yensyesldee-qdrdlsyikimdvgqsyvvnrvadh-iqsrivy-ylmn
f26l_human yevnyqpldee-ldshlsyikifdvgtrymvnrvqdh-iqsrtvy-ylmn
f26h_bovin ykvtyqpldpdshdkdlsfikvinvgqrflvnkvqdy-iqskivy-ylmn
f26_yeast  yerfyepldpq-kdkdmtfiklvniieevvinkirty-lesrivf-yvmn
6p21_yeast ylkayepie---ddenlqyikmidvgkkviayniqgf-lasqtvy-ylln

1uky       airdsl
kcy_dicdi  lfk---
kad1_pig   hl----
kad_schma  elq---
kad_miclu  av----
1dvrA      klgkn-
kad_mycca  elk---
kad_bacsu  ll----
kadc_maize llgsi-
kad_giala  vls---
kad_salty  il----
kad_lacla  vl----
kad_parde  vm----
1gky       fifaek
kgua_bovin alsee-
kgua_ecoli iirae-
kgua_mycge illse-
dlg1_drome miwsq-
em55_human ------
va57_vaccv il----
1bif       ihv---
f26l_human ihv---
f26h_bovin ihv---
f26_yeast  irp---
6p21_yeast fnl---



