
SAGA FORMAT
alignement  1ag8_ref4.t_coffee_aln10 nseq=19 len=552
T_COFFEE ALIGNMENT
CPU TIME:2199780



ftdh_rat   ----nkltlqmpyqlf-iggefvdaegsktyntinptdg-svicqvslaq
dha6_yeast itlpngltyeqptglf-innkfmkaqdgktypvedpste-ntvcevssat
dhag_human -------------------------rsg-tekafepatg-rviatftcsg
dha5_yeast --------------lf-innefcpssdgktietvnpatg-epitsfqaan
dhab_atrho -------------qlf-idgewrepllknripiinpste-eiigdipaat
dha2_alceu --vs--npykqqyeny-iggawvppaggeyfesttpitg-kpftrvprsg
roca_bacsu --------------lv-ingekiet--drkiisinpankeeiigyastad
gabd_ecoli -ndsn--lfr--qqal-ingewldanngeaidvtnpang-dklgsvpkmg
hpcc_ecoli -----------------kn---v--agndyflttnpatg-evladvasgg
alda_ecoli --------vq--hpmy-idgqfvtwrgdawidvvnpate-avisripdgq
dhal_bacst kvqte---i-ktyfny-ingnwvssvsnnvepsinpanrhdivgyvqrst
mmsa_pseae -------------rhl-iagafveglgaqripvsnpldn-stlaeiacas
dhal_ecoli --------ien--rlf-ingeytaaaenetfetvdpvtq-aplakiargk
dmpc_psesp ---------------f-ingafvgsasgrtfedvnpang-qviarvheag
dhal_psesp --------------------hgva--tsdylpvlnpatr-qpigqcpvas
xylc_psepu etk-e---qpiwygkv-fssnwveargg-vanvvdpsng-dilgitgvan
dhal_pseol --------mtip-islakln--ssadthsalevfn---------------
dhax_pea   ---------------f-ingqwk--angptvhsvnpstn-qviasvteat
dha2_bacsu ----------hk-ayf-aag-------htr--------------------

ftdh_rat   vsdvdkavaaakeafeng---lwgkinardrgrllyrladvmeqhqeela
dha6_yeast tedveyaiecadrafhdt---ewatqdprergrllskladelesqidlvs
dhag_human ekevnlavqnakaafk-----iwsqksgmercrilleaariireredeia
dha5_yeast ekdvdkavkaaraafdn----vwsktsseqrgiylsnllklieeeqdtla
dhab_atrho aedvevavvaarkafkrnkgrdwaal-wshrakylraiaakitekkdhfv
dha2_alceu qqdvdaaldaahaak--a---awartstteranilnriadrieanlklla
roca_bacsu qelaekamqaalqafd-----swkkqrpehranilfkaaailrrrkhefs
gabd_ecoli adetraaidaanralp-----awraltakeratilrnwfnlmmehqddla
hpcc_ecoli eaeinqavatakeafp-----kwanlpmkerarlmrrlgdlidqnvpeia
alda_ecoli aedarkaidaaeraqp-----ewealpaieraswlrkisagireraseis
dhal_bacst ledvneavtaaneaqt-----swwkrsgvergeylykaahileqclqdia
mmsa_pseae aeqveqavasaretfa-----swketpvserarvmlryqallkehhdela
dhal_ecoli svdidramsaargvferg---dwslsspakrkavlnkladlmeahaeela
dmpc_psesp raevdaavqaaraalkg----pwgkmsvseraeilhrvadgitarfdefl
dhal_psesp eehveqaraaagdafa-----vwrqvpygkrceqlqalagileahldela
xylc_psepu gedvdaavnaakraqk-----ewaaipfseraaivrkaaeklkereyefa
dhal_pseol --------lqkvassar-rg----kfgiaeriaalnllketiqrrepeii
dhax_pea   lddyeeglrasseaak-----twrtvpapkrgeivrqigdalrakldplg
dha2_bacsu --------------------------plesrlnilrklkqavrtheadli

ftdh_rat   tiealdrgavytlalk--thvgmsiqtfryfagwcdkiq-ga--tipinq
dha6_yeast siealdngktlafkar--gdvtiainclrdaaayadkvn-gr--tintg-
dhag_human tmecinngksifea-r--ldidiswqcleyyaglaasma-ge--hiqlp-
dha5_yeast aletldagkpyhsnak--gdlaqilqltryfagsadkfdkga--tiplt-
dhab_atrho kletldsgkprdeavldiddvatcfeyfeyfagqaeald-ak-qkapvtl
dha2_alceu vaesidngkpvretta--adlplavdhfryfagciraqe-gg--iseid-
roca_bacsu sylvkeagkpwkea-d--adtaeaidflefyarqmlklkega--pvksr-
gabd_ecoli rlmtleqgkplaea-k--geisyaasfiewfaeegkriy-gd--tipghq
hpcc_ecoli ametadtglpihqtkn--vliprashnfeffaevcqqmn-gk--typvd-
alda_ecoli aliveeggkiqqla-e--vevaftadyidymaewarrye-ge--iiqsdr
dhal_bacst etmtremgktlaea-k--aetmrgvhilryyagegarki-gd--vipssd
mmsa_pseae kivsselgktfeda-k--gdvwrgievvehacnvpsllm-ge--tvenva
dhal_ecoli lletldtgkpirhslr--ddipgaarairwyaeaidkvy-ge--vatts-
dmpc_psesp eaecldtgkpkslash--idiprgaanfkvfadllknva-te-a-femat
dhal_psesp qlltheqgkplada-r--gelagaiafcq-cagslp--l-pe-v-vheqs
xylc_psepu dwnvrecgairpkg-l--weagiayeqmhqaaglaslpn-gt--lfpsav
dhal_pseol aalaadfrkpasevkl--teifpvlqeinhakrnlkdwmkprrvraalsv
dhax_pea   rlvalemgkilaeg-i--gevqeiidmcdysvglsrqln-gs--iipser
dha2_bacsu aalyqdlhkseqeays--teigivleeisfvmkrlrkwskpkrvktplth

ftdh_rat   arpnrnltltkkepvgvcgivipwnyplmmlswktaaclaagntvvikpa
dha6_yeast -d-g-ymnfttlepigvcgqiipwnfpimmlawkiapalamgnvcilkpa
dhag_human -g-g-sfgytrreplgvcvgigawnypfqiaswksapalacgnamvfkps
dha5_yeast -f-n-kfaytlkvpfgvvaqivpwnyplamacwklqgalaagntviikpa
dhab_atrho p-merfkshvlrqpigvvglispwnypllmdtwkiapalaagcttvlkps
dha2_alceu -a-d-tiayhfheplgvvgqiipwnfpllmatwklapalaagncvvlkpa
roca_bacsu -a-g-evnqyhyealgvgivispfnfplaimagtavaaivtgntillkpa
gabd_ecoli -a-d-krlivikqpigvtaaitpwnfpaamitrkagpalaagctmvlkpa
hpcc_ecoli -d-k-mlnytlvqpvgvcalvspwnvpfmtatwkvapclalgitavlkms
alda_ecoli p--g-enillfkralgvttgilpwnfpffliarkmapalltgntivikps
dhal_bacst -s-e-gllfttrvplgvvgvispwnfpvaipiwkmapalvygntvvlkpa
mmsa_pseae r--n-idtysitqplgvcvgitpfnfpamiplwmfplaiacgnafilkps
dhal_ecoli -s-h-elamivrepvgviaaivpwnfpllltcwklgpalaagnsvilkps
dmpc_psesp pdgsgainyavrrpkgvigvispwnlplllmtwkvgpalacgntvvvkps
dhal_psesp -a-t-rlsktvreplgvvvaivpwnypvsiafvkpdrrvgcrkhadsqag
xylc_psepu p--g-rmnlcqrvpvgvvgviapwnfplflamrsvapalalgnavilkpd
dhal_pseol -a-g-traglryepkgvcliiapwnypfnlsfgplvsalaagnsvvikps
dhax_pea   p--e-hmmfevwnplgivgvitafnfpcavlgwnacialvggntvvwkga
dha2_bacsu -l-g-sksiiipepygtvlviapwnyplqlalspligaiaagntvvlkps

ftdh_rat   qvtplta-lkfa----eltlkagipkgvvnilpgsgs-lvgqrlsdhpdv
dha6_yeast avtplna-lyfa----slckkvgipagvvnivpgpgr-tvgaaltndpri
dhag_human pftpvsa-llla----eiyseagvppglfnvvqg-ga-atgqflcqhpdv
dha5_yeast entslsl-lyfa----tlikkagfppgvvnivpgygs-lvgqalashmdi
dhab_atrho elasvtc-lefg----evcnevglppgvlniltglgp-dagapivshpdi
dha2_alceu eqtpasi-lvlm----evigdl-lppgvvnvingfgl-eagkplasspri
roca_bacsu daapvva-akfv----evmeeaglpngvlnyipgdga-eigdflvehpkt
gabd_ecoli sqtpfsa-lala----elairagvpagvfnvvtgsag-avgneltsnplv
hpcc_ecoli elsplta-drlg----elaleagipagvlnvvqgyga-tagdalvrhhdv
alda_ecoli eftpnna-iafa----kivdeiglprgvfnlvlgrge-tvgqelagnpkv
dhal_bacst setavta-akvi----ecfheagfpkgvvnmvcgsgs-vvgqgianhpdi
mmsa_pseae eqvplts-vrla----elfleagapkgvlqvvhg-gk-eqvdqllkhpqv
dhal_ecoli eksplsa-irla----glakeaglpdgvlnvvtgfgh-eagqalsrhndi
dmpc_psesp eetpltt-allg----evmqaagvpagvynvvhgfgpdsagafltehpdv
dhal_psesp adhaady-lrig----elirda-lpagvinvlag-nd-dlgpwltghadv
xylc_psepu lqtavtggalia----eifsdagmpdgvlhvlpg-ga-dvgesmvansgi
dhal_pseol eltphta-tlig----sivrea-fsvdlvavveg-da-avsqellalp-f
dhax_pea   pttplit-vavtkliaevfernnlpgaiftalcg-ga-dighaiakdtri
dha2_bacsu eytpavs-ails----klissv-fptdyvamaeg-gp-dvstallqqp-f

ftdh_rat   rkigftgstevgkhimkscal-----snvkkvslelggkspliifadc--
dha6_yeast rklaftgstevgksvavdsse-----snlkkitlelggksahlvfdda--
dhag_human akvsftgsvptgmkimemsa------kgikpvtlelggkspliifsdc--
dha5_yeast dkisftgstkvggfvleasgq-----snlkdvtlecggkspalvfeda--
dhab_atrho dkvaftgssatgskimasaa------qlvkpvtlelggkspvimfedi--
dha2_alceu skvaftgetttgrlimqyas------qnlipvtlelggkspniffedvla
roca_bacsu rfvsftgsravgcriyeraakvqpgqkwlkrviaemggkdtvlvdkda--
gabd_ecoli rklsftgsteigrqlmeqca------kdikkvslelggnapfivfdda--
hpcc_ecoli ravsftggtatgrnimknag--------lkkysmelggkspvlifeda--
alda_ecoli amvsmtgsvsagekimataa------knitkvclelggkapaivmdda--
dhal_bacst dgvtftgsntvgkqvgraaf------ergakyqlemggknpvivakda--
mmsa_pseae kavsfvgsvavgqyvyhtgt------ahnkrvqsfagaknhmvimpda--
dhal_ecoli daiaftgstrtgkqllkdagd-----snmkrvwleaggksanivfadc--
dmpc_psesp naitftgetrtgeaimraaa------kgvrpvsfelggknagivfadc--
dhal_psesp akisftgssvtgrhvarsaa------adlkrltlelggndaavvmads--
xylc_psepu nmisftgstqvgrligekcg------rmlkkvalelggnnvhivlpda--
dhal_pseol dhifftgsprvgklvmeaas------ktlasvtlelggksptiigpta--
dhax_pea   plvsftgsskvgalvqqtvs------qrfgktllelsgnnaiivmdda--
dha2_bacsu dyifftgsvavgkivmeaaa------kqlipvtlelggkspcivhkda--

ftdh_rat   -d---lnkavqmgmssvf-fnkgenciaagrlfveesihnqfvqkvveev
dha6_yeast -n---ikktlpnlvngif-knagqicssgsriyvqegiydellaafkayl
dhag_human -d---mnnavkgalmanf-ltqgqvccngtrvfvqkeildkfteevvkqt
dha5_yeast -d---ldkaidwiaagif-ynsgqnctansrvyvqssiydkfvekfketa
dhab_atrho -d---ietavewtlfgvf-wtngqicsatsrllvhesiaaefvdrmvkwt
dha2_alceu addaffdkaleg--famfalnqgevctcpsraliqesiydrfmeralkrv
roca_bacsu -d---ldlaassivysaf-gysgqkcsagsravihqdvydevvekavalt
gabd_ecoli -d---ldkavegalaskf-rnagqtcvcanrlyvqdgvydrfaeklqqav
hpcc_ecoli -d---ieraldaalftif-singerctagsrifiqqsiypefvk-faera
alda_ecoli -d---lelavkaivdsrv-insgqvcncaervyvqkgiydqfvnrlgeam
dhal_bacst -d---ldlavegtisggl-rstgqkctatsrvfierevyepfkakllerv
mmsa_pseae -d---kaqvisnlvgasv-gaagqrcmais-vavlvgaarewipeirdal
dhal_ecoli pd---lqqaasataagif-ynqgqvciagtrllleesiadeflallkqqa
dmpc_psesp -d---ldkaiegsmrsvf-anggqvclgterlyverpifdefvarlkaga
dhal_psesp -l---sdavvervfwsaf-tnagqicmatkrlyihesiyeafrdklvaya
xylc_psepu -d---legavscaawgtf-lhqgqvcmaagrhlvhrdvaqqyaeklalra
dhal_pseol -n---lpkaarnivwgkf-snngqtciapdhvfvhrciaqkfneilvkei
dhax_pea   -d---itlavrsiffaav-gtagqrcttcrrlylhesvyanvleqltaly
dha2_bacsu -d---iqlaakrivfgkf-tnagqtciapdylfvhediktklteemkrai

ftdh_rat   e-km--kig--npl--er-dtnhgpqnheahlrklveycqrgvkegatlv
dha6_yeast etei--kvg--npf--dk-anfqgaitnrqqfdtimnyidigkkegakil
dhag_human q-ri--kig--dpl--le-dtrmgplinrphlervlgfvkvakeqgakvl
dha5_yeast k-kewdvagkfdpf--de-kcivgpvisstqydriksyiergkreekldm
dhab_atrho k-ni--kis--dpf--ee-gcrlgpviskgqydkimkfistaksegatil
dha2_alceu a-ai--rqg--hpl--dt-gtmigaqasaeqlekilsyidlgrkegaqcl
roca_bacsu k-tl--tvg--npe--dp-dtymgpviheasynkvmkyieigksegk-ll
gabd_ecoli s-kl--hig--dgl--dn-gvtigplidekavakveehiadalekgarvv
hpcc_ecoli n-rv--rvg--dpt--dp-ntqvgalisqqhwekvsgyirlgieegatll
alda_ecoli q-av--qfg--npa--erndiamgplinaaalerveqkvaraveegarva
dhal_bacst k-ql--kig--ngl--da-etwmgpcasesqfhtvlsyiekgksegakli
mmsa_pseae a-kv--rpg--pwd--ds-gasygpvinpqakarierligqgveegaqll
dhal_ecoli q-nw--qpg--hpl--dp-attmgtlidcahadsvhsfiregeskgqlll
dmpc_psesp e-sl--vig--tpd--dp-qanfgplislqhrekvlsyyqkavdegatvv
dhal_psesp q-nv--vig--dgs--qp-gvtmgplqnakqfakvmslidavrqrggrli
xylc_psepu k-nl--vvg--dpn--sd-qvhlgplinekqvvrvhalvesaqragaqvl
dhal_pseol v-rv--ygk--dfaaqrr-sadycrivndqhfnrinklltdakakgakil
dhax_pea   k-qv--kig--npl--ee-gtlvgplhtrsavenfkngisaiksqggkiv
dha2_bacsu r-ef--ygp--q-p--er-npqygkivserhyqrllsflnd----gip-l

ftdh_rat   cggnqv----p---rpgfffqptvftdve-dhmyiakeesfgpimiisrf
dha6_yeast tggekv----g---dkgyfirptvfydvn-edmrivkeeifgpvvtvakf
dhag_human cggdiyvpedp-klkdgyymrpcvltncr-ddmtcvkeeifgpvmsilsf
dha5_yeast fqtsef----piggakgyfipptiftdvp-qtskllqdeifgpvvvvskf
dhab_atrho cggsrp-----ehlkkgyyieptiitdit-tsmqiwkeevfgpvicvktf
dha2_alceu tgger-n-vldgdlaggyyvkptvfag-h-nkmrifqeeifgpvvsvttf
roca_bacsu aggegd----d---skgyfiqptifadvd-enarlmqeeifgpvvaicka
gabd_ecoli cggkah----e---rggnffqptilvdvp-anakvskeetfgplaplfrf
hpcc_ecoli aggpdkpsdlpahlkggnflrptvladvd-nrmrvaqeeifgpvacllpf
alda_ecoli fggkav----e---gkgyyypptllldvr-qemsimheetfgpvlpvvaf
dhal_bacst yggnr---clegelangffveptifedvd-lqmtiareeifgpvlaliqv
mmsa_pseae ldgrgykv--eg-ypdgnwvgptlfagvr-pdmaiyreevfgpvlclaev
dhal_ecoli dg-rn---a---gla--aaigptifvdvd-pnaslsreeifgpvlvvtrf
dmpc_psesp tgggvp--empaelaggawvqptiwtgla-dgaavvteeifgpcchirpf
dhal_psesp ecgqmr----g---gdgyfl-pitfvdlpdesapevveeafgpllpllkf
xylc_psepu aggtyq---------d-ryyqatvimdvk-pemevfkseifgpvapitvf
dhal_pseol qggqvd--------aterlvvptvlsnvt-aamdinheeifgpllpiiey
dhax_pea   tggsvles--e-----gnfvvptiv-eis-adaavvkeelfapvlyvmkf
dha2_bacsu tggqsd--------pnhhkiaptileqvr-ddspvmqeeifgpilplfty

ftdh_rat   adgdvdavlsranatefglasgvftrdinkalyvsd--klqagtvfint-
dha6_yeast kt--leegvemanssefglgsgieteslstglkvak--mlkagtvwint-
dhag_human dt--eaevlerandttfglaagvftrdiqrahrvva--elqagtcfinn-
dha5_yeast tn--yddalklandtcyglasavftkdvkkahmfar--dikagtvwins-
dhab_atrho kt--edeaielandteyglagavfskdlercervtk--alevgavwvnc-
dha2_alceu kd--eeealaiandtlyglgagvwtrdgarafrmgr--giqagrvwtnc-
roca_bacsu rd--fdhmleiannteygltgalltknrahierare--dfhvgnlyfnr-
gabd_ecoli kd--eadviaqandtefglaayfyardlsrvfrvge--aleygivgint-
hpcc_ecoli kd--eaealrlandveyglasyiwtqdvskvlrlar--gieagmvfvnt-
alda_ecoli dt--ledaismandsdygltssiytqnlnvamkaik--glkfgetyinr-
dhal_bacst ds--ieeaiklandteyglsasiytknignalefik--dieaglikvna-
mmsa_pseae ds--leqairlinespygngtsiftssgaaartfqh--hievgqvgini-
dhal_ecoli ts--eeqalqlandsqyglgaavwtrdlsrahrmsr--rlkagsvfvnn-
dmpc_psesp dr--eeeavelanslpyglaatiwtentsrahrvag--qleagivwvns-
dhal_psesp rd--vdeviervnaartgwlaasgvv-igrsahglq--qpstrsvwstt-
xylc_psepu ds--ieeaielancseyglaasihtralatgldiak--rlntgmvhind-
dhal_pseol dd--idsvikrvndgdkplalyvfsedkqfvnniva--rtssgsvgvnl-
dhax_pea   kd--leeaialnnsvpqglsssiftqkpstifkwigpsgsdcgivnvnip
dha2_bacsu rn--igeviekvqsrpkplalylfttnkeieravlg--nlsfgggcvnd-

ftdh_rat   ynk--tdv--aapfggfkqsg-fg--kdlg-eaalneylrikt-vt----
dha6_yeast ynd--fds--rvpfggvkqsg-yg--remg-eevyhaytevka-vrikl-
dhag_human ynv--spv--elpfggykksg-fg--reng-rvtieyysqlkt-vcvemg
dha5_yeast snd--edv--tvpfggfkmsg-ig--relg-qsgvdtylqtka-vhinls
dhab_atrho sqp--cfv--hapwggvkrsg-fg--relg-ewgienylnikq-vtsdis
dha2_alceu yha--ypa--haafggykqsg-ig--renh-rmmldhyqqtkn-llvsys
roca_bacsu gct--gaivgyqpfggfnmsg-td--skaggpdylilhmqakt-ts----
gabd_ecoli gii--sne--vapfggikasg-lg--regs-kygiedyleiky-mcigl-
hpcc_ecoli qfv--rdl--rhafggvkpr--tg--regg-gysfevfaemkknvcip--
alda_ecoli enf--eam--qgfhagwrksg-ig--gadg-khglheylqtqv-vylq--
dhal_bacst etag-vef--qapfggmkqssshs--reqg-qaaiefftsikt-vfvk--
mmsa_pseae pip--vpl-pffsftgwkgsf-ygdlhayg-kqgvrfytetkt-vtarwf
dhal_ecoli ynd--gdm--tvpfggykqsg-ng--rdks-lhalekftelkt-iwisle
dmpc_psesp wfl--rdl--rtafggskqsg-ig--regg-vhslefytelkn-icvkl-
dhal_psesp gcd---ha--vysfggmkasg-yg--aesg-legllefttqkt-viiq--
xylc_psepu qpin-cep--hvpfggmgasg-sgg-rfgg-pasieeftqsqw-ismvek
dhal_pseol svvhflhp--nlpfggvnnsg-ig--sahg-vygfrafshekp-vli---
dhax_pea   tng--ae--iggafggekatg-gg--reag-sdswkqymrrst-ctinyg
dha2_bacsu tlmhvatp--ylpfggvgesg-ig--syhg-fdsfntfthkks-vvkqtn

ftdh_rat   --
dha6_yeast --
dhag_human dv
dha5_yeast ld
dhab_atrho de
dha2_alceu pn
roca_bacsu --
gabd_ecoli --
hpcc_ecoli --
alda_ecoli --
dhal_bacst --
mmsa_pseae ds
dhal_ecoli --
dmpc_psesp --
dhal_psesp --
xylc_psepu pa
dhal_pseol --
dhax_pea   se
dha2_bacsu r-



