
SAGA FORMAT
alignement  2myr_ref2.t_coffee_aln10 nseq=19 len=590
T_COFFEE ALIGNMENT
CPU TIME:2458398



2myr       --------dfifgvassayqiegti---grglniwdgfthrypd-ksgpd
bgls_trirp lsrssfprgfifgagssayqfegavneggrgpsiwdtfthkype-kir-d
bglc_maize pqrdwfpsdftfgaatsayqiegawnedgkgesnwdhfchnhpe-ril-d
bgl2_bacsu -hpesfpkhflwgsasaayqiegawnedgkgpsvwdvftki-pg-ktf-k
lacg_staau --tktlpedfifggataayqaegatntdgkgrvawdtylee-ny-w----
lacg_lacac --tktlpkdfifggataayqaegatktdgkgrvawdkflee-nf-w----
lacg_lacca --skqlpqdfvmggataayqvegatkedgkgrvlwddfldk-qg-r----
bgla_bacpo mtifqfpqdfmwgtataayqiegayqedgrglsiwdtfaht-pg-kvf-n
bglb_bacpo -ntfifpatfmwgtstssyqieggtdeggrtpsiwdtfcqi-pg-kvi-g
bgla_thema mnvkkfpegflwgvatasyqiegspladgagmsiwhtfsht-pg-nvk-n
bgla_bacci -----fpsdfkwgvataayqiegaynedgrgmsiwdtfaht-pg-kvk-n
bgla_clotm mskitfpkdfiwgsataayqiegaynedgkgesiwdrfsht-pg-nia-d
bgls_agrsp --aarfpgdflfgvatasfqiegstkadgrkpsiwdafcnm-pg-hvf-g
bgls_calsa ----sfpkgflwgaatasyqiegawnedgkgesiwdrfthq-kr-nil-y
lph_human  fyhgtfrddflwgvsssayqiegawdadgkgpsiwdnftht-pgsnvk-d
lph_rabit  fvygqfpegfvwststaafqiegawradgkglgiwdtftht-rl-kie-n
1gowA      ----s----frfgwsqagfqsemgtpgsedpntdwykwvhd-pe-nma-a
1edg       ---------fvkg-----lrlg--wn-lg---ntfdafngt----nit-n
1ceo       --mvsfkaginlggwisqyqv----------------fske-h----f--

2myr       h-gngdttcd---sfsywqkdidvldelnatgyrfsiawsriipr-gkr-
bgls_trirp g-snaditvd---qyhrykedvgimkdqnmdsyrfsiswprilpk-gkl-
bglc_maize g-snsdigan---syhmyktdvrllkemgmdayrfsiswprilpk-gtk-
bgl2_bacsu g-tngeiavd---hyhrfkedvalmaemglkayrfsvswprvfpk-g---
lacg_staau --ytaepasd---fynrypvdlelsekfgvngirisiawsrifpn-g---
lacg_lacac --ykgdpasd---fyhnyvedlelaekfggnvirisiawsrifpn-g---
lacg_lacca --fkpdpaad---fyhrydedlalaekyghqvirvsiawsrifpd-g---
bgla_bacpo g-dngnvacd---syhryeedirlmkelgirtyrfsvswprifpn-g---
bglb_bacpo g-dcgdvacd---hfhhfkedvqlmkqlgflhyrfsvawprimpa-----
bgla_thema g-dtgdvacd---hynrwkedieiieklgvkayrfsiswprilpe-g---
bgla_bacci g-dngnvacd---syhrveedvqllkdlgvkvyrfsiswprvlpq-g---
bgla_clotm g-htgdvacd---hyhryeedikimkeigiksyrfsiswprifpe-g---
bgls_agrsp r-hngdiacd---hynrweedldlikemgveayrfslawpriipd-g---
bgls_calsa g-hngdvacd---hyhrfeedvslmkelglkayrfsiawtrifpd-g---
lph_human  n-atgdiacd---syhqldadlnmlralkvkayrfsiswsrifpt-gr--
lph_rabit  d-diadvacd---syhkisedvvalqnlavthyrfsiswsrilpd-gt--
1gowA      glvsgdlpengpgywgnyktfhdnaqkmglkiarlnsewsrqfpn-plpr
1edg       e-ldyetsws---gikttkqmidaikqkgfntvripvswhphvsg-s---
1ceo       ---------d---tfi-tekdietiaeagfdhvrlpfdypiiesddn---

2myr       ----s---r-----gv------------nqkgidyyhglidglikkgitp
bgls_trirp ----s---g-----gi------------nhegikyynnlinellangiqp
bglc_maize ----e---g-----gi------------npdgikyyrnlinlllengiep
bgl2_bacsu ----k---g-----ei------------neaglafydslidellshhiep
lacg_staau ----y---g-----ev------------npkgveyyhklfaechkrhvep
lacg_lacac ----d---g-----ev------------kpngvdfyhklfaecdarhvep
lacg_lacca ----a---g-----ev------------eprgvafyhklfadcaahhiep
bgla_bacpo ----d---g-----ev------------nqegldyyhrvvdllndngiep
bglb_bacpo ----a---g-----ii------------neegllfyehlldeielaglip
bgla_thema ----t---g-----rv------------nqkgldfynriidtllekgitp
bgla_bacci ----t---g-----ev------------nragldyyhrlvdellangiep
bgla_clotm ----t---g-----kl------------nqkgldfykrltnlllengimp
bgls_agrsp ----f---g-----pi------------nekgldfydrlvdgckargikt
bgls_calsa ----f---g-----tv------------nqkglefydrlinklvengiep
lph_human  ----n---s-----si------------nshgvdyynrlinglvasnifp
lph_rabit  ----t---n-----yi------------neaglnyyvrlidallaanikp
1gowA      pqnfdeskqdvteveinenelkrldeyankdalnhyreifkdlksrglyf
1edg       ----d---y-----ki------------sdvwmnrvqevvnycidnkmyv
1ceo       ----v---g-----ey------------kedglsyidrclewckkynlgl

2myr       fvtlfhwdlp-qtlqdey----e------gfldp---qiiddfkdyadlc
bgls_trirp fvtlfhwdlp-qvledey----g------gflns---gvindfrdytdlc
bglc_maize yvtifhwdvp-qaleeky----g------gfldkshksivedytyfakvc
bgl2_bacsu vltlyhwdlp-qalmdey----g------gfesr---niiedfnhycitl
lacg_staau fvtlhhfdtp-evlhkd-----g------dflnr---ktidyfvdyaeyc
lacg_lacac fvtlhhfdtp-eglhed-----g------dflth---ekmddfveyadyc
lacg_lacca fvtlhhfdtp-erlhea-----g------dwlsq---emlddfvayakfc
bgla_bacpo fctlyhwdlp-qalqda-----g------gwgnr---rtiqafvqfaetm
bglb_bacpo mltlyhwdlp-qwiede-----g------gwtqr---etiqhfktyasvi
bgla_thema fvtiyhwdlp-falqlk-----g------gwanr---eiadwfaeysrvl
bgla_bacci fctlyhwdlp-qalqdq-----g------gwgsr---itidafaeyaelm
bgla_clotm aitlyhwdlp-qklqdk-----g------gwknr---dttdyfteysevi
bgls_agrsp yatlyhwdlp-ltlmgd-----g------gwasr---stahafqryaktv
bgls_calsa vvtlyhwdlp-qklqdi-----g------gwanp---eivnyyfdyamlv
lph_human  mvtlfhwdlp-qalqdi-----g------gwenp---alidlfdsyadfc
lph_rabit  qvtmyhfdlp-qalqdv-----g------gwene---tivqrfkeyadvl
1gowA      iqnmyhwplp-lwlhdpirvrrgdftgpsgwlst---rtvyefarfsayt
1edg       ilnthh-dvd-kvk--------g------yfpss---qymasskkyi---
1ceo       vldmhh--apgyrfqd--------------fkts---tlfedpnq---q-

2myr       feefgdsvkywltinqlysvptr----gygsalda---pgrcsptv-dps
bgls_trirp fkefgdrvrywstlnepwvfsns----gyalgtna---pgrcsas--n-v
bglc_maize fdnfgdkvknwltfnepqtftsf----sygtgvfa---pgrcspgl-d-c
bgl2_bacsu ykrfgdrvkywvtlneqnynfnh----gfitamhp---pg----vk-dr-
lacg_staau fkefpe-vkywttfneigpigdg----qylvgkfp---pg----ikydf-
lacg_lacac fkefpe-vkywitineirsvavd----qyiignfp---pa----dtfgf-
lacg_lacca feefse-vkywitineptsmavq----qyttgtfp---pa----esgrf-
bgla_bacpo frefhgkiqhwltfnepwciafl----snmlgvha---pg----lt-nl-
bglb_bacpo mdrfgerinwwntinepycasil----gygtgeha---pg----he-nw-
bgla_thema fenfgdrvknwitlnepwvvaiv----ghlygvha---pg----mr-di-
bgla_bacci fkelggkikqwitfnepwcmafl----snylgvha---pg----nk-dl-
bgla_clotm fknlgdivpiwfthnepgvvsll----ghflgiha---pg----ik-dl-
bgls_agrsp marlgdrldavatfnepwcavwl----shlygvha---pg----er-nm-
bgls_calsa inrykdkvkkwitfnepyciafl----gyfhgiha---pg----ik-df-
lph_human  fqtfgdrvkfwmtfnepmylawl----gygsgefp---pg----vk-dpg
lph_rabit  fqrlgdkvkfwitlnepfvvayh----gygtglya---pg----iyfrpg
1gowA      awkfddlvdeystmnepnvvggl----gy-vgvksgfppg----yl-sf-
1edg       -------tsvwaqiaar-fanyd----ehli---f---eg----------
1ceo       -krf---vdiwrflakryinerehiafellnqv---vepd----str---

2myr       cya-gnsstepyivahhqllahakvvdlyrknyth-qggkigptmitrwf
bgls_trirp akp-gdsgtgpyivthnqilahaeavhvyktkyqayqkgkigitlvsnwl
bglc_maize ayptgnslvepytaghnillahaeavdlynkhykr-ddtriglafdvmgr
bgl2_bacsu --------krfyeanhiaflanakaiesfreyvp---egkigpsfayspa
lacg_staau --------ekvfqshhnmmvaharavklfkdggy---kgeigvvhalptk
lacg_lacac --------dkmfqthhnqmvgharavklfkhdgs---kgeigivhalqtn
lacg_lacca --------dktfqaehnqmvaharivnlyksmql---ggqigivhalqtv
bgla_bacpo --------qtaidvghhllvahglsvrrfrelgt---sgqigiapnvswa
bglb_bacpo --------reaftaahhilmchgiasnlhkekgl---tgkigitlnmehv
bgla_thema --------yvafravhnllraharavkvfretvk---dgkigivfnngyf
bgla_bacci --------qlaidvshhllvahgravtlfrelgi---sgeigiapntswa
bgla_clotm --------rtslevshnlllshgkavklfremni---daqigialnlsyh
bgls_agrsp --------eaalaamhhinlahgfgveasrhvap---kvpvglvlnahsa
bgls_calsa --------kvamdvvhslmlshfkvvkavkenni---dvevgitlnltpv
lph_human  --------wapyriahtvikaharvyhtydekyrqeqkgvislslsthwa
lph_rabit  --------tapyivghnlikahaeawhlyndvyrasqggvisitissdwa
1gowA      --------elsrramyniiqaharaydgiksvs----kkpvgiiyanssf
1edg       ----m---neprlvgh--------anewwpel-------tn---------
1ceo       -----------wnkl------mlecikaireids---tmwlyiggn-nyn

2myr       lpynd------tdrhsiaatermkqffl-gwfmgpltn-gtypqimidtv
bgls_trirp mpldd------nsipdikaaersldfqf-glfmeqltt-gdysksmrriv
bglc_maize vpygt------s-fldkqaeerswdinl-gwflepvvr-gdypfsmrsla
bgl2_bacsu yplss------h-pedilafenaeeftn-nwwldmycw-gtypqipfrcl
lacg_staau ypfdp------snpedvraaelediihn-kfildatyl-gkysretmegv
lacg_lacac ypfne------snpadigaaeledlldn-kflvdgtfv-gkypqetmeav
lacg_lacca ypysd------sa-vdhhaaelqdalen-rlyldgtla-geyhqetlalv
bgla_bacpo vpyst------s-eedkaacartislhs-dwflqpiyq-gsypqflvdwf
bglb_bacpo daase------r-pedvaaairrdgfin-rwfaeplfn-gkypedmvewy
bgla_thema epase------k-eediravrfmhqfnnyplflnpiyr-gdypelvlefa
bgla_bacci vpyrr------t-kedmeaclrvngwsg-dwyldpiyf-geypkfmldwy
bgla_clotm ypase------k-aedieaaelsfslag-rwyldpvlk-grypenalkly
bgls_agrsp ipasd------g-eadlkaaerafqfhn-gaffdpvfk-geypaemmeal
bgls_calsa ylqterlgykvs-eieremvslssqldn-qlfldpvlk-gsypqklldyl
lph_human  epksp------gvprdveaadrmlqfsl-gwfahpifrngdypdtmkwkv
lph_rabit  eprdp------snqedveaakryvqfmg-gwfahpifkngdynevmktqi
1gowA      qpltd---------kdmeavemaendnr-wwffdaiir-geitrgnek--
1edg       --------sdv-----vdsincinqln-qd-fvn-tvr-atggknasryl
1ceo       spdel------knladidddyivynfh----fynpfff-thqkahwsesa

2myr       ga----------rlptfs-----peetnlvkg---sydflglnyyftqya
bgls_trirp kn----------rlpkfs-----kfesslvng---sfdfiginyysssyi
bglc_maize re----------rlpffk-----deqkeklag---synmlglnyytsrfs
bgl2_bacsu ekq----gw---a-ptie-----agdmdllak--gkpdfvgvnyyqtity
lacg_staau qhi-lsv--n---ggkln---itdedyaildaakdlndflginyymsdwm
lacg_lacac kdi-laa--n--hggefn---iede-fkaidaakdvqdfvgvdyylsewm
lacg_lacca kei-lda--n--hqpmfq--stpq-emkaideaahqldfvgvnnyfskwl
bgla_bacpo aeq----ga---t-vpiq-----dgdmdiige---pidmiginyysmsvn
bglb_bacpo gty----ln---gldfvq-----pgdmeliqq---pgdflginyytrsii
bgla_thema rey-----l-----peny-----kddmseiqe---kidfvglnyysghlv
bgla_bacci enl----gy---k-ppiv-----dgdmelihq---pidfiginyytssmn
bgla_clotm kkk----gi---e-lsfp-----eddlklisq---pidfiafnnyssefi
bgls_agrsp gdr-----m-----pvve-----aedlgiisq---kldwwglnyytpmrv
bgls_calsa vqk----dl---l-dsqkalsm-qqevkenfi---fpdflginyytravr
lph_human  gnrselqhlatsrlpsft-----eeekrfira---tadvfclntyysriv
lph_rabit  rerslaaglnesrlpeft-----esekrring---tydffgfnhyttvla
1gowA      ----------------i----vr-ddl---kg---rldwigvnyytrtvv
1edg       mcpgyv----as----pdgat-----ndy---frmpndisgnnnkiivsv
1ceo       ma--------y-----n-rt---------vky---pgqyegieef----v

2myr       qpsp--npvnatnhtammda----gakltyin-asgh-yigplfesdggd
bgls_trirp snap--shgnak-psystn----pmtnisfek-h-gi-plgpr--a----
bglc_maize knid--ispnys-pvlntdd---ayasqevng-pdgk-pigpp--m----
bgl2_bacsu ernpldgvsegk-mnttgqkgtnqetgipgvfktkkn-phltt--s----
lacg_staau rg--ydgeseit-hnatgdkggsk-yqlkgvgqre-fdvdvpr--t----
lacg_lacac ra--ydgkseit-hngtgdkgtsk-vqvkgvgeek-lpdgiet--t----
lacg_lacca ra--yhgkseti-hngdgtkgssv-arlqgvgeek-lpdgiet--t----
bgla_bacpo rfnp-----eag---------f---lqseein------mglpv--t----
bglb_bacpo rstn-----das---------l---lqveqvh------meepv--t----
bgla_thema kfdp-----dap------a-------kvsfve------rdlpk--t----
bgla_bacci rynp---g-eag------g--m---lsseais------mgapk--t----
bgla_clotm kydp---ssesg---------f---spansil------ekfek--t----
bgls_agrsp adda---tpgve----fpa--t---mpapavs--------dvk--t----
bgls_calsa lyde---ns-sw---------i---fpirweh------pagey--t----
lph_human  qhkt---prlnp-psyeddq----ema-eeed-ps-----wps--t----
lph_rabit  ynfn--ypsi-m-stvdadr----gva-sivd-rs-----wpg--s----
1gowA      krte---kgyv-slggyg-hgcer----nsvsla-glp----t--s----
1edg       ha--ycpwn-fa-glamadggtn----awnind------skdq--s----
1ceo       knnp-----ky---------s-fm-mel---------n----n--lkln-

2myr       gssniyyyp----kgiysvmdyfknk-yyn-pliyvtengis-tpgs---
bgls_trirp asiwiyvypymfiqedfeifcyilkiniti-lqfsitengmnefnda--t
bglc_maize gnpwiymyp----eglkdllmimknk-ygn-ppiyitengig-dvdtket
bgl2_bacsu nwdw-tidp----iglriglrritsr-yql--pvfitenglg-efdk---
lacg_staau dwdw-miyp----qglydqimrvvkd-ypnyhkiyitenglg-ykdefie
lacg_lacac dwdw-liyp----qglydkimrvknd-ypnihkvyitengig-fkdtvpd
lacg_lacca dwdw-siyp----rgmydilmrihnd-yplvpvtyvtengig-lkeslpe
bgla_bacpo digw-pves----rglyevlhylqk--ygn-idiyitengac-inde---
bglb_bacpo dmgw-eihp----esfyklltriekd-fskglpilitengaa-mrde---
bgla_thema amgw-eivp----egiywilkkvkee-ynp-pevyitengaa-fddv---
bgla_bacci digw-eiya----eglydllrytadk-ygn-ptlyitengac-yndg---
bgla_clotm dmgw-iiyp----eglydllmlldrd-ygk-pnivisengaa-fkde---
bgls_agrsp digw-evya----palhtlvetlyer-ydl-pecyitengac-ynmg---
bgls_calsa emgw-evfp----qglfdlliwikes-ypq-ipiyitengaa-yndi---
lph_human  a--mnraap----wgtrrllnwikee-ygd-ipiyitengvg-ltn----
lph_rabit  gsywlkmtp----fgfrrilnwikee-ynn-ppiyvtengvs-hrg----
1gowA      dfgw-effp----eglydvltkywnr-yh--lymyvtengia---dd---
1edg       evtw-fmd------niyn---kytsr--g--ipviigecgav-dkn----
1ceo       ---k-ellr----kdlkpaief-rek-k-k-cklycgefgvia-ia----

2myr       -enrkesmldytridylcshlcflnkvikekdvnvkgylawalgdnyefn
bgls_trirp -lpveeallntyridyyyrhlyyirsair-agsnvkgfyawsfldcnewf
bglc_maize plpmeaalndykrldyiqrhiatlkesid-lgsnvqgyfawslldnfewf
bgl2_bacsu -v-edgtvqddyridylrshleqcrqais-dgvdligycswsftdllswl
lacg_staau s---ektvhddaridyvrqhlnviadaii-dganvkgyfiwslmdvfsws
lacg_lacac neetdktvhddaridyvkqhleviadaia-dganvkgyfiwslmdvftwt
lacg_lacca natpdtviedpkridyvkkylsamadaih-dganvkgyfiwslqdqfswt
bgla_bacpo -v-vngkvqddrrisymqqhlvqvhrtih-dglhvkgymawslldnfewa
bglb_bacpo -l-vngqiedtgrhgyieehlkachrfie-eggqlkgyfvwsfldnfewa
bgla_thema -vsedgrvhdqnridylkahigqawkaiq-egvplkgyfvwslldnfewa
bgla_bacci -lsldgrihdqrridylamhliqasraie-dginlkgymewslmdnfewa
bgla_clotm -igsngkiedtkriqylkdyltqahraiq-dgvnlkayylwslldnfewa
bgls_agrsp -v-engqvndqprldyyaehlgivadlir-dgypmrgyfawslmdnfewa
bgls_calsa -vtedgkvhdskrieylkqhfeaarkaie-ngvdlrgyfvwslmdnfewa
lph_human  -----pntedtdrifyhktyinealkayrldgidlrgyvawslmdnfewl
lph_rabit  ----dsylndttriyylrsyinealkavqqdkvdlrgytvwtlmdnfewy
1gowA      --------adyqrpyylvshvyqvhrain-sgadvrgylhwsladnyewa
1edg       --------nlktrveymsyyvaqa---ka-rgilc---ilwd-nnnfs--
1ceo       ----d----lesrikwhedyis-----ll-eeydigg-avw----nyk--

2myr       ngftvrfglsyinwnn--v--tdrdlkksgqwyqkfisp-
bgls_trirp agftvrfglnfvdxkd--g--lkrypklsaqwyknflkrn
bglc_maize agfterygivyvdrnn--n--ctrymkesakwlkefnt--
bgl2_bacsu ngyqkrygfvyvnrdeestsdlkrlkkksfywyqdvi---
lacg_staau ngyekryglfyvdfe---t--qerypkksaywykel----
lacg_lacac ngytkryglfyvdfd---t--qdrypsktadwfknl----
lacg_lacca ngyskryglffvdfp---t--qnryikqsaewfk------
bgla_bacpo egynmrfgmihvdfr---t--qvrtpkesyywyrnvvs--
bglb_bacpo wgyskrfgivhinye---t--qertpkqsalwfkqmma--
bgla_thema egyskrfgivyvdys---t--qkrivkdsgywysnvv---
bgla_bacci egygmrfglvhvdyd---t--lvrtpkdsfywykgvis--
bgla_clotm ygynkrfgivhvnfd---t--lerkikdsgywykevi---
bgls_agrsp egyrmrfglvhvdyq---t--qvrtvknsgkwysalas--
bgls_calsa mgytkrfgiiyvdye---t--qkrikkdsfyfyqqyik--
lph_human  ngytvkfglyhvdfnnt-n--rprtarasaryytevit--
lph_rabit  tgfsdkfglhfvnysdp-s--lpripresakfyasivr--
1gowA      sgfsmrfgllkvdyn---t--krlywrpsalvyreiatng
1edg       -gtgelfgff--drrs--c--qfkfp-eiidgmvkya---
1ceo       ---kmdfeiyned----------rkp--vsqelvnilar-



