
SAGA FORMAT
alignement  2pia_ref2.t_coffee_aln10 nseq=18 len=370
T_COFFEE ALIGNMENT
CPU TIME:1053978



1ndh       paitlenp-dik-yplrlidkevvnhdt--rrfrfalpspehilglpvgq
nia_volca  p-lvvlnp-rqk-vklplierielnrnt--rifrfglpspqhriglpvgk
nia_cicin  pkeiaptr-rek-ipcklisktsvshdv--rlfrfalpspdqvlglpvgk
NIA1_MAIZE p--alsnp-rek-ihcrlvgkkelsrdv--rlfrfslpspdqvlglpigk
nia7_horvu -avalanp-rek-vrcrlvdkksmshnv--rlfrfalpspdqklglpvgk
nia_phyin  -tdvalkg-rtk-vpivlisrevvshda--rifkfalpakdlrlglpign
nc5r_yeast p---vldpkrndfqsfplvektilthnt--smykfglphaddvlglpigq
nia_emeni  prptfltp-kaw-tkatltkktsvssdt--hiftlslehpsqalglptgq
nia_lepmc  lrptflds-rtw-skallssktkvswdt--rifrfkldhasqtlglptgq
nia_aspng  pratflqs-ksw-tkatlvkrtdvswdt--riftfqlqhdkqtlglpigq
mcr1_yeast ----fkgd-dkw-idlpiskieeeshdt--rrftfklptedsemglvlas
nia_fusox  ----flqa-ktw-skaildkktsispdt--kifsfklnheaqkiglptgq
nia_neucr  ----flqs-ktw-nsailtfkesvspdt--kifhfalshpaqsiglpvgq
nia_ustma  ----fldp-kkw-ratrlgeqanhspda--rifrfalgsedqelglpwpa
nia_beaba  ----flqp-kyw-skailetktdvssds--kifsfrldhaaqsiglptgq
1fnc       tv-nkfkpktpy-vgrcllntkitgddapgetwhmvfsheg-eipyregq
2pia       pq-----e-dgf-lrlkiaskekiardi--wsfeltdpqgaplppfeaga
1fdr       ---------adw-vtgkvtkvqnwt-d---alfsltvh--apvlpftagq

1ndh       hiylsar----idg-nlvirpytpvssd----ddkgfvdlvikvyfkd--
nia_volca  hvftyat----ing-envmraytpisgd----eelgrldmlikvyfan--
nia_cicin  hvfvcat----idd-klcmraytptsti----devgyfellvkiyfkg--
NIA1_MAIZE hifvcas----ieg-klcmraytptsmv----deighfdllvkvyfkn--
nia7_horvu hvyvcas----tgg-klcmraytptssv----eevghvellikiyfkd--
nia_phyin  hvflyak----ing-ktavraytpissen--dedrgfvsflikvyfag--
nc5r_yeast hivikan----ing-kditrsytptsldg---dtkgnfellvksy-----
nia_emeni  hlmlktpdpkssss-gsiirsytpisp-s---dqlgmvdilikiyae---
nia_lepmc  hlmirlrdp--vtr-eaiirsytpisq-i---seqgfcdvlikiyad---
nia_aspng  hlmikvadp--tsk-eaiirsytpisd-t---nqegtmdllvkiyfd---
mcr1_yeast alfakfvtp---kg-snvvrpytpvsd-l---sqkghfqlvvkhy-----
nia_fusox  hlmmrlrdp--atr-eaiirsytpysd-g---sdcgrldilikiyyd---
nia_neucr  hlmmrlpdp--akptesiiraytpisdgt---lergtlrvlvkiyya---
nia_ustma  alrlslekrrtgea-emvqraytpysg-n---tqrgfldilikvyfpsda
nia_beaba  hllvrlrdp--atr-eaviraytplse-t---hakgqldilikiyrd---
1fnc       svgv-ipdgedkngkphklrlysiassalgdfgdaksvslcvkrliyt--
2pia       nltvavp-----ng-s--rrtyslcnd-s---qernryviavk--r--d-
1fdr       ftklgle----idg-ervqraysyvnsp----dnp---d--lefylv---

1ndh       ---thpk--fpaggkmsqylesmkigd-----tiefrgpngllvyqgkgk
nia_volca  ---ehpa--fpdggkmsqhfeslrigd-----tvefkgplghfvydgrgs
nia_cicin  ---vepk--fpngglmsqhlesmelgs-----sieikgplghieymgrgt
NIA1_MAIZE ---ehpk--fpngglmtqyldslpvgs-----yidvkgplghveytgrgs
nia7_horvu ---edpk--fpagglmsqyldalplga-----pvdikgpvghieyagrga
nia_phyin  ---dnpv--hpegglfsqyldglhlgq-----qiqikgplghftyygdgn
nc5r_yeast ----------pt-gnvskmigelkigd-----siqikgprgnyhye-rn-
nia_emeni  ----tps--ip-ggkmttaldtlplgs-----vieckgptgrfeyldrgr
nia_lepmc  ----apg--re-ggkmtkaldsipcgh-----wvdmkgpigkfeylgkgv
nia_aspng  ----tpt--vk-ggkmtmaleklalgs-----eidckgptgrfeylgngk
mcr1_yeast ----------e-ggkmtshlfglkpnd-----tvsfkgpimkwkwqpn--
nia_fusox  ----tpq--rk-ggvmtqaldalpigh-----wvdfkgptgkfvyhgngl
nia_neucr  ----sptedik-ggqmtqaldalalgk-----avefkgpvgkfvyqgrgv
nia_ustma  aatsapa--fe-ggkmtmllekidvsspsddltielkgplgsftylgqqq
nia_beaba  ----vpg--qp-ggkmtqaldsiplgh-----fvdikgpvgkfeylgkgh
1fnc       ---ndag--etikgvcsnflcdlkpga-----evkltgpvgkemlmpk--
2pia       ----sng---r-ggsis-fiddtsegd-----avevslprnefpld----
1fdr       ----t----vpd-gklsprlaalkpgd-----evqvvseaagffvld---

1ndh       fairpd-kksspviktvksvgmiaggtgitpmlqviraimkd------pd
nia_volca  ytlngklhkh------athmsfvaggtgitpcyavikaalrd------pe
nia_cicin  fsvhgk-qkf------arklamfaggtgitpdlssdasylkd------pe
NIA1_MAIZE fvingk-qrh------asrlamicggsgitpmyqiiqavlrdq-----pe
nia7_horvu ftvgge-rrf------arrlamvaggtgitpvyqviqavlrdq-----pd
nia_phyin  fslett-nfh------aykfgfvaggtgitpvyqvmrailed------ak
nc5r_yeast c---------------rshlgmiaggtgiapmyqimkaiamd------ph
nia_emeni  vlisgk-erf------vksfvmicggtgitpvfqvlravmqd------eq
nia_lepmc  csingn-err------vrsmkmicggsgitpiyqvlrailqd------sa
nia_aspng  ilvsgk-erh------vssfkmicggtgitpifqvlravmqd------kq
mcr1_yeast ---------q------fksitllgagtginplyqlahhiven------pn
nia_fusox  ctinek-err------vrrfimvcggsgitpirqvlravidn------pk
nia_neucr  csvngr-erk------vkrfvmvcggsgvtpiyqvaeavavd------dq
nia_ustma  irwkpasacs------lrklamiaggsgitpiwstlkaiadevldasnps
nia_beaba  ctvsgt-srh------vrrfvmicagsgvtpifqvlravtsd------aq
1fnc       -------dpn------a-tiimlgtgtgiapfrsflwkmffe------kh
2pia       --------kr------aksfilvaggigitpmlsmarqlrae------gl
1fdr       -----e-vph------cetlwmlatgtaigpylsilr-lgkd------ld

1ndh       ----dhtvch----llfanqtekdillrpeleelrneh-s--arfklwyt
nia_volca  ----dktqis----lvfannteedillreeldelannh-p--drfhlwht
nia_cicin  ----ddtemy----vvyanrteddillreeldawadky-s--drvkvwyv
NIA1_MAIZE ----dhtemh----lvyanrteddillrdeldrwaaey-p--drlkvwyv
nia7_horvu ----dttemh----lvyanrteddmllreeidrwaaan-p--arlkvwyv
nia_phyin  ----dqtkva----liycvrsqrdlllrkeletlqklr-p--gqcrifyt
nc5r_yeast ----dttkvs----lvfgnvheedillkkelealvamk-p--sqfkivyy
nia_emeni  ----detkcv----mldgnrleedillkneldefeala-gkkekckivht
nia_lepmc  ----dsthct----vlngnrleedilcredldrfaeen-g--erctlvht
nia_aspng  ----dptscv----vldgnrqeedilcradldayeald-s--kkckvvht
mcr1_yeast ----dktkvn----llygnktpqdillrkeldalkeky-p--dkfnvtyf
nia_fusox  ----dttpcl----vfngnrsvndilcmeeleeleaan-p--srcrvvna
nia_neucr  ----dgtecl----vldgnrvegdilmkseldelverakp-mgrcrvkyt
nia_ustma  spaldpiqiw----ivygnrteqdilireeldalsrl-k---gnlkvwhv
nia_beaba  ----dgtecl----vldgnrcekdilcreeldamvara-p--arttllhk
1fnc       ----ddykfnglawlflgvptsssllykeefekmkeka-p--dnfrldfa
2pia       ----rs--fr----lyyltrdpegtaffdeltsdewrs-----dvkihhd
1fdr       ----rfknlv----lvhaaryaadlsylplmqelekry-e--gklriqtv

1ndh       vdrap---------e-awdysq-gfvneemir----dhlp--p--pe---
nia_volca  vsqtn---s-----s-dwkfst-grvtlemfk----qhlf--a--cs--g
nia_cicin  vaksi---r-----e-gwkyse-gfitedimr----ehvp--e--vs---
NIA1_MAIZE idqvk---r--pe-e-gwkysv-gfvteavlr----ehvp--e--gg---
nia7_horvu vskvg---r--pe-d-aweygv-grvdeqvlr----ehlp--l--gg--d
nia_phyin  lsdmelldrndpivr-gwaygk-srlnfamvk----niig--s------d
nc5r_yeast ldspd---r-----e-dwtggv-gyitkdvik----ehlp--a--at--m
nia_emeni  ltkgs---------e-swtgrr-grideelir----qhagtp-------d
nia_lepmc  ltqaa---------e-gwtgrr-grigeellk----efcg-t-------e
nia_aspng  ltkap---------d-swtgrr-grisedllk----eha-ip-------d
mcr1_yeast vddkq------dd-q-dfdgei-sfiskdfiq----ehvpgp-------k
nia_fusox  lsnpp---------p-ewnglk-gfvnqalvp----eymdlpk--as-ge
nia_neucr  lsrpg---------a-eweglr-grldktmle----revg--e--gd-lr
nia_ustma  lsnct------peneanwsmgr-gislpmslgapatnhrq--scfggdel
nia_beaba  lsrpd---------a-swcglr-grmdkeyle----ehiggfr--ks--d
1fnc       vsreq---t---n----ekgek-myiqtrmaq----yavelwem-lk--k
2pia       h--------gd--------ptk-afdfwsvfe----ksk-----------
1fdr       vsret---a---a-g-sltgripaliesgele----stiglpm--n---k

1ndh       eeplvlmcgpppmiqyacl-------p--------nlervghp-------
nia_volca  peclalmcgppamlehccv-------p--------flesmgys-------
nia_cicin  edtlalacgpppmiqfain-------p--------nlekmgyd-------
NIA1_MAIZE ddtlalacgpppmiqfais-------p--------nlekmkyd-------
nia7_horvu getlalvcgppamlectvr-------p--------glekmgyd-------
nia_phyin  aed-vcmcgpegmieyack-------p--------allklnyd-------
nc5r_yeast dnvqilicgppamva-svr-------r--------stvdlgfrrs---kp
nia_emeni  retmvlvcgpeamek-ask-------k--------illslgwk-------
nia_lepmc  edglvlvcgpegler-svk-------g--------llsgmawr-------
nia_aspng  gksmvlicgpeamek-sar-------k--------illeqgwa-------
mcr1_yeast esthlfvcgpppfmn-aysg-ekks-pkdqgeligilnnlgys-------
nia_fusox  gdelllvcgpppmvk-ave-------a--------sflgmgfk-------
nia_neucr  getmvllcgpegmqn-mvr-------e--------vlkgmgwk-------
nia_ustma  edtlalvcgpppmek-avs-------d--------glnelgwd-------
nia_beaba  gremvlvcgpaalee-tvr-------s--------vlvemawk-------
1fnc       dntyvymcglkgmek-gid-------d--------imvslaaaegidwi-
2pia       paqhvyccgpqalmd-tvr-------d--------m-tgh-wp-------
1fdr       etshvmlcgnpqmvr-dtqqllketrq--------mtkhlrrrp-----g

1ndh       --kercfa-----------f
nia_volca  --keqmih------------
nia_cicin  --iknsllv-----------
NIA1_MAIZE --mansfvv----------f
nia7_horvu --ldkdclv-----------
nia_phyin  --lktqttv----------f
nc5r_yeast lskmedqvf----------v
nia_emeni  --een-lhy-----------
nia_lepmc  --ddd-vif-----------
nia_aspng  --esd-lhf-----------
mcr1_yeast --kdq--vf----------k
nia_fusox  --sdd-fvf-----------
nia_neucr  --ded-vlv-----------
nia_ustma  --lqr-cvv-----------
nia_beaba  --ped-mlf-----------
1fnc       --eyk-rqlkkaeqwnvevy
2pia       --sgt-vhf--e----s--f
1fdr       -hmt-aehy----------w



