
SAGA FORMAT
alignement  1ajsA_ref2.t_coffee_aln10 nseq=20 len=495
T_COFFEE ALIGNMENT
CPU TIME:2170000



1ajsA      -qpwvlpvvrkveqrian--nsslnheyl-pilglae-frtc-asrlalg
aatc_orysa -kplvlnvvrraeqmlin--npsrvkeyl-pitglad-fnkl-saklifg
aat1_medsa -kplvldvvrrverqlln--dmsrnkeyi-pivglad-fnkl-saklifg
aat4_arath -kplvldvvrraeqqlan--d--ldkeyl-plnglpe-fnkl-stklilg
aat2_arath -kplvldvvrkaeqqlvn--dpsrvkeyi-pivgisd-fnkl-saklilg
aatm_human -kpyvlpsvrkaeaqiaa---knldkeyl-pigglae-fcka-saelalg
aatc_yeast -kpwvlpsvkaaeklihn--dssynheyl-gitglps-ltsn-aakiifg
aatm_chick -ksyvlncvrkaeamiaa---kkmdkeyl-piaglad-ftra-saelalg
aat1_arath -kpvvlecvreaekrlag----stfmeyl-pmggsak-mvdl-tlklayg
aatm_lupan -qpyvlkvvnkaenlmle---rgqnkeyl-aieglaa-fnka-taelllg
aatm_arath -qpyvlnvvkkaenlmle---rgdnkeyl-pieglaa-fnka-taellfg
aat_haein  -ttpimhavkeaekrlfd---kektknyl-tidgiad-yneq-tkallfg
aat_ecoli  -ktpvltsvkkaeqylle---nettknyl-gidgipe-fgrc-tqellfg
tyrb_ecoli iip-qlqavaeaearlna--qphgaslyl-pmeglnc-yrha-iapllfg
phhc_pseae ltp-ilrsvklaeqrlve--q-ettksyv-gghgdal-faar-laelalg
aatm_yeast -kvttfpsvakaqklieshlelnknlsyl-pitgske-fqen-vmkflfk
atty_rhime -rtpifravkaaekrlle---tqdskayi-gpegdlv-fldr-lwelvgg
2dkb       -hpeivsvigeyagkl-d--h-lfsemlsrpvvdlatrlani-tppgldr
2gsaA      -hpeviealkvamekgts---f-----------gapc-alen-vlaemvn
1ax4A      -sdhqwaamitgdeayag--sr--nyydl-kdkakel-fnydyiipahqg

1ajsA      dd--spa-----lqekrvggvqslggtgalrigaeflarwyngt-nnkdt
aatc_orysa ad--spa-----iqenrvatvqclsgtgslrvggeflarhyher------
aat1_medsa ad--spa-----iqenrvttvqglsgtgslrvggeflakhyhqr------
aat4_arath dd--spa-----lkenrvvttqclsgtgslrvgaeflathnkes------
aat2_arath ad--spa-----itesrvttvqclsgtgslrvgaeflkthyhqs------
aatm_human en--sev-----lksgrfvtvqtisgtgalrigasflqrffkfs---r--
aatc_yeast tq--sda-----fqedrvisvqslsgtgalhisakffskffpdk------
aatm_chick en--sea-----fksgryvtvqgisgtgslrvganflqrffkfs---r--
aat1_arath dn--sef-----ikdkriaavqtlsgtgacrlfadfqkrfspgs------
aatm_lupan ad--npa-----ikqqrvatvqglsgtgslrlgaalieryfpga------
aatm_arath ag--hpv-----ikeqrvatiqglsgtgslrlaaalieryfpga------
aat_haein  kd--sev-----iqsnrartvqslggtgalriaaefikrqtkaq------
aat_ecoli  kg--sal-----indkrartaqtpggtgalrvaadflakntsvk------
tyrb_ecoli ad--hpv-----lkqqrvatiqtlggsgalkvgadflkryfpes------
phhc_pseae aa--spl-----lleqradatqtpggtgalrlagdfiahclpgr------
aatm_yeast es--cpqfgpfylahdrisfvqtlsgtgalavaakflalfi-sr------
atty_rhime -d----t-----iershvagvqtpggsgalrlaadliarmg-gr------
2dkb       alllstg-----aesneaairmaklvtgkyeivg-faqs-whgmtgaaas
2gsaA      da--vps-----iemvrfvn----sgteacmavlrlmraytgr-----d-
1ax4A      rg--aen-----ilfpvllkykqkegkaknpv---fis-nfhfd---t-t

1ajsA      pvyvssptwenhngvft--------------tag-fkdirsyrywdtek-
aatc_orysa tiyipqptwgnhpkvft--------------lag-lt-vrsyryydpat-
aat1_medsa iiylptptwgnhtkvfn--------------lag-lt-vktyryyapat-
aat4_arath vifvpnptwgnhprift--------------lag-ls-vqyfryydpks-
aat2_arath viyipkptwgnhpkvfn--------------lag-ls-veyfryydpat-
aatm_human dvflpkptwgnhtpifr--------------dag-mq-lqgyryydpkt-
aatc_yeast lvylskptwanhmaife--------------nqg-lk-tatypywanet-
aatm_chick dvylpkpswgnhtpifr--------------dag-lq-lqayryydpkt-
aat1_arath qiyipvptwsnhhniwk--------------daq-vp-qktyhyyhpet-
aatm_lupan kvlisaptwgnhknifn--------------dar-vp-wseyryydpkt-
aatm_arath kvvissptwgnhknifn--------------dak-vp-wseyryydpkt-
aat_haein  nvwistptwpnhnaifn--------------avg-mt-ireyryydaer-
aat_ecoli  rvwvsnpswpnhksvfn--------------sag-le-vreyayydaen-
tyrb_ecoli gvwvsdptwenhvaifa--------------gag-fe-vstypwydeat-
phhc_pseae giwlsdptwpihetlfa--------------aag-lk-vshypyvsadn-
aatm_yeast diwipdpswanhknifq--------------nng-feniyrysyykd---
atty_rhime giwlglpswpnhapifk--------------aag-ld-iatydffdips-
2dkb       atysagrk------gvgp------a------avgsfa-ipapftyrprfe
2gsaA      kiikfegcyhghadmflvkagsgvatlglpsspg-vp-kkttantlttp-
1ax4A      aahvel-ngckainivt--------------eka-fd-set---yddwk-

1ajsA      r-g-ldlqgfls---d-len---------ap-efsif-vlhacahnptg-
aatc_orysa r-g-ldfqglle---d-lgs---------ap-sgaiv-llhacahnptg-
aat1_medsa r-g-ldfqglle---d-lgs---------ap-sgsvv-llhacahnptg-
aat4_arath r-g-ldfkgmle---d-lga---------ap-pgaiv-vlqacahnptg-
aat2_arath r-g-ldfkglle---d-lga---------ap-sgaiv-llhacahnptg-
aatm_human c-g-fdftgave---d-isk---------ip-eqsvl-llhacahnptg-
aatc_yeast k-s-ldlngfln---a-iqk---------ap-egsif-vlhscahnptg-
aatm_chick c-s-ldftgame---d-isk---------ip-eksii-llhacahnptg-
aat1_arath k-g-ldfsalmd---d-vkn---------ap-egsff-llhacahnptg-
aatm_lupan v-g-ldfegmie---d-ika---------ap-egtfv-llhgcahnptg-
aatm_arath i-g-ldfegmia---d-ike---------ap-egsfi-llhgcahnptg-
aat_haein  k-a-ldwehlle---d-lsq---------as-egdvv-llhgcchnptg-
aat_ecoli  h-t-ldfdalin---s-lne---------aq-agdvv-lfhgcchnptg-
tyrb_ecoli n-g-vrfndlla---t-lkt---------lp-arsiv-llhpcchnptg-
phhc_pseae r---ldveamla---g-ler---------ip-qgdvv-llhacchnptg-
aatm_yeast g-q-ididgwie---q-lktfaynnqqennk-nppci-ilhacchnptg-
atty_rhime q-s-vifdnlvs---a-leg---------aa-sgdav-llhaschnptg-
2dkb       rngaydylaeldyafdlidr---------qs-sgnla-afiaepilssgg
2gsaA      y-n--dleavka---l-fae---------npgeiagv-ilepivgnsgf-
1ax4A      g-d-fdikklke---n-iaq---------hg-adnivaivstvtcnsag-

1ajsA      tdp-tpeqwkq-iasvmkrrflfpffdsa------yqgfa-sgn------
aatc_orysa vdp-tldqweq-irqlmrskallpffdsa------yqgfa-sgs------
aat1_medsa vdp-tleqweq-irqlirsksllpffdsa------yqgfa-sgs------
aat4_arath vdp-tfeqwek-frrlvrsksllpffdsa------yqgfa-sgs------
aat2_arath vdp-tseqweq-irqlmrsksllpffdsa------yqgfa-sgs------
aatm_human vdp-rpeqwke-iatvvkkrnlfaffdma------yqgfa-sgd------
aatc_yeast ldp-tseqwvq-ivdaiasknhialfdta------yqgfa-tgd------
aatm_chick vdp-rqeqwke-lasvvkkrnllayfdma------yqgfa-sgd------
aat1_arath vdp-teeqwre-isqlfkakkhfaffdma------yqgfa-sgd------
aatm_lupan idp-tpeqwek-iadviqeknhipffdva------yqgfa-sgs------
aatm_arath idp-tpeqwvk-iadviqeknhipffdva------yqgfa-sgs------
aat_haein  idp-tpeqwqe-laalsakngwlplfdfa------yqgla-ng-------
aat_ecoli  idp-tleqwqt-laqlsvekgwlplfdfa------yqgfa-rg-------
tyrb_ecoli adl-tndqwda-vieilkarelipfldia------yqgfg-ag-------
phhc_pseae fdl-shddwrr-vldvvrrrellplidfa------yqgfg-dg-------
aatm_yeast ldp-tkeqwek-iidtiyelkmvpivdma------yqgle-sgn------
atty_rhime gvl-seaqwme-iaalvaergllplvdla------yqgfg-rg-------
2dkb       iiel-pdgymaalkrkceargmllildea------qtgvgrtgtmfacqr
2gsaA      ivp-dagfleg-lreitlehdallvfdev------mtgfr-ia-------
1ax4A      gqpvsmsnlke-vyeiakqhgifvvmdsarfcenayfika-rd-------

1ajsA      --lekdawairyfvseg------felfcaqsfsknfglynervgnltvva
aatc_orysa --ldqdaqsvrmfvadg------gellmaqsyaknmglygervgalsivc
aat1_medsa --ldadaqpvrlfvadg------gellvaqsyaknmglygervgalsivs
aat4_arath --ldadaqavrmfvadg------gecliaqsyaknmglygerigsltivc
aat2_arath --ldtdaqsvrtfvadg------gecliaqsytknmglygervgalsivc
aatm_human --gdkdawavrhfieqg------invclcqsyaknmglygervgaftmvc
aatc_yeast --ldkdayavrlgvekl---stvspvfvcqsfaknagmygervgcfhlal
aatm_chick --inrdawalrhfieqg------idvvlsqsyaknmglygeragaftvic
aat1_arath --pardaksirifledg------hhigisqsyaknmglygqrvgclsvlc
aatm_lupan --ldedaasvrlfvarg------levlvaqsysknlglyaerigainvis
aatm_arath --ldedaasvrlfaerg------meffvaqsysknlglyaerigainvvc
aat_haein  --ldedayglrafaanh------kellvassfsknfglynervgaftlva
aat_ecoli  --leedaeglrafaamh------kelivassysknfglynervgactlva
tyrb_ecoli --meedayairaiasag------lpalvsnsfskifslygervgglsvmc
phhc_pseae --leedawavrlfagel------pevlvtsscsknfglyrdrvgalivca
aatm_yeast --llkdayllrlclnvnkypnwsngiflcqsfaknmglygervgslsvit
atty_rhime --ldqdvaglrhllgvv------pealvavscsksfglyreragaifart
2dkb       dgvtpdiltlsktlgag------lp-laaivtsaaieerahelg---ylf
2gsaA      --yg----gvqekfg--vtp-d----lt--tlgkiigg-glpvgayg---
1ax4A      --pkyknatikevifdm------ykyadaltmsakxdplln-igglvair

1ajsA      k----e---------pdsilrvlsqmqkivrvtwsnpp-aqg---ariva
aatc_orysa g----s---------advavrvesqlklvirpmysnpp-ihg---asiva
aat1_medsa k----s---------advssrvesqlklvirpmysspp-ihg---asiva
aat4_arath t----s---------edvakkvenqvllvvrpmyltpp-ihg---asiva
aat2_arath k----s---------advaskvesqvklvvrpmysspp-ihg---asiva
aatm_human k----d---------adeakrvesqlkilirpmysnpp-lng---ariaa
aatc_yeast tkqaqn---------ktikpavtsqlakiirsevsnpp-ayg---akiva
aatm_chick r----d---------aeeakrvesqlkilirpmysnpp-mng---arias
aat1_arath e----d---------pkqavavksqlqqlarpmysnpp-lhg---aqlvs
aatm_lupan s----s---------pesaarvksqlkriarpmysnpp-vhg---ariva
aatm_arath s----s---------adaatrvksqlkriarpmysnpp-vhg---ariva
aat_haein  e----n---------aeiastsltqvksiirtlysnpa-shg---gatva
aat_ecoli  a----d---------setvdrafsqmkaairanysnpp-ahg---asvva
tyrb_ecoli e----d---------aeaagrvlgqlkatvrrnysspp-nfg---aqvva
phhc_pseae q----n---------aekltdlrsqlaflarnlwstpp-ahg---aevva
aatm_yeast patanngkfnplqqknslqqnidsqlkkivrgmysspp-gyg---srvvn
atty_rhime s----s---------tasadrvrsnlaglartsysmpp-dhg---aavvr
2dkb       ytth-v-------sdplpaavglrvldvvqrdglvaranvmg---drlrr
2gsaA      ------------------gkreimqlvapagpmyqagt-lsg---nplam
1ax4A      d----n---------eeift-larqrcvpmegfvtygg-lagrdmaamvq

1ajsA      r-------tls-dpelfhewtg-nvktmadri--lsmrselrarlealkt
aatc_orysa t-------ilk-dsamfnewtv-elkgmadri--ismrqqlfdalktret
aat1_medsa a-------ilk-drdlyndwti-elkamadri--inmrqqlfdalrargt
aat4_arath t-------ilk-nsdmyndwti-elkgmadri--ismrqqlyaaleargt
aat2_arath t-------ilk-ssdmynnwti-elkemadri--ksmrqqlfeaiqargt
aatm_human a-------iln-tpdlrkqwlq-evkgmadri--igmrtqlvsnlkkegs
aatc_yeast k-------lle-tpelteqwhk-dmvtmssri--tkmrhalrdhlvklgt
aatm_chick l-------iln-tpelrkewlv-evkgmadri--ismrtqlvsnlkkegs
aat1_arath t-------ile-dpelkslwlk-evkvmadri--igmrttlresleklgs
aatm_lupan d-------ivg-npalfdewkv-ememmagri--knvrqqlydsisskdk
aatm_arath n-------vvg-dvtmfsewka-ememmagri--ktvrqelydslvskdk
aat_haein  t-------vln-daqlrqewen-eltemreri--kkmrhlfvqllkeyga
aat_ecoli  t-------ils-ndalraiweq-eltdmrqri--qrmrqlfvntlqekga
tyrb_ecoli a-------vln-dealkaswla-eveemrtri--lamrqelvkvlstemp
phhc_pseae a-------ilg-dselkglwqe-evegmrsri--aslriglvealaphgl
aatm_yeast v-------vls-dfklkqqwfk-dvdfmvqrl--hhvrqemfdrl---gw
atty_rhime t-------ild-dpelrrdwte-eletmrlrm--tglrrslaeglrtrwq
2dkb       g-------ll--d--lm-erfd-cigdvrgrg--lllgveivkdrrtkep
2gsaA      tagiktlellr-qpgtyeyldq-itkrlsdgl--laiaqetghaacggqv
1ax4A      g-------leegteeeylhyrigqvkylgdrlreagipiqyptg--ghav

1ajsA      pg-twnhitdqi-g-mfsftg-lnpkqvey-l------inqkhiyllps-
aatc_orysa pg-dwshiikqi-g-mftftg-lnsdqvaf-m------rqeyhiymtsd-
aat1_medsa pg-dwshiikqi-g-mftftg-lnpeqvsi-l------tkeyhiyltsd-
aat4_arath pg-dwshiikhi-g-mftftg-lseeqvrl-m------akeyhiymtyd-
aat2_arath pg-dwshiikqi-g-mftftg-lnkeqvef-m------tkefhiymtsd-
aatm_human th-nwqhitdqi-g-mfcftg-lkpeqver-l------ikefsiymtkd-
aatc_yeast pg-nwdhivnqc-g-mfsftg-ltpqmvkr-l------eethavylvas-
aatm_chick sh-nwqhitdqi-g-mfcftg-lkpeqver-l------tkefsiymtkd-
aat1_arath pl-swehvtkqi-g-mfcysg-ltpeqvdr-l------tseyhiymtrn-
aatm_lupan sgkdwsfilkqi-g-mfsytg-lnknqsdn-m------tnkwhvymtkd-
aatm_arath sgkdwsfilkqi-g-mfsftg-lnkaqsdn-m------tdkwhvymtkd-
aat_haein  eq-dfsfiieqn-g-mfsfsg-ltgeqvdr-l------knefaiyavrs-
aat_ecoli  nr-dfsfiikqn-g-mfsfsg-ltkeqvlr-l------reefgvyavas-
tyrb_ecoli er-nfdyllnqr-g-mfsytg-lsaaqvdr-l------reefgvylias-
phhc_pseae ae-rfahvgaqr-g-mfsytg-lspqqvar-l------rdehavylvss-
aatm_yeast p--dlvnfaqqh-g-mfyytr-fspkqvei-l------rnnsfvyltgd-
atty_rhime ---slgavadqe-g-mfsmlp-lseaevmr-l------rtehgiympas-
2dkb       adglgakitrec---mnlgls-mnivqlpg-m------g---gvfriap-
2gsaA      sg-mfgfffteg-p-vhnyed-akksdlqk-fsrfhrgmleqgiylapsq
1ax4A      f-vdckklvpqipgdqfpaqavinalylesgvra----veigsfllgrd-

1ajsA      ----g----------rinmcg--lttknldyvatsiheavtkiqx
aatc_orysa ----g----------rismag--lsgrtiphladaihaavtklk-
aat1_medsa ----g----------rismag--lssktvphlahaihavvtrv--
aat4_arath ----g----------rismas--lssktvpqladaihavvtri--
aat2_arath ----g----------rismag--lssktvphladamhaavtrl--
aatm_human ----g----------risvag--vtssnvgylahaihqvt-k---
aatc_yeast ----g----------rasiag--lnqgnveyvakaidevv-----
aatm_chick ----g----------risvag--vassnvgylahaihqvt-k---
aat1_arath ----g----------rismag--vttgnvgylanaihevt-k---
aatm_lupan ----g----------rislag--lslakceyladaiidsfhyvs-
aatm_arath ----g----------rislag--lslakceyladaiidsyhnvs-
aat_haein  ----g----------rinvag--itednirylcesivkvl-----
aat_ecoli  ----g----------rvnvag--mtpdnmaplceaivavl-----
tyrb_ecoli ----g----------rmcvag--lntanvqrvakafaavm-----
phhc_pseae ----g----------ranvag--lharrlgrlaqaiaq-------
aatm_yeast ----g----------rlslsg--vndsnvdylcesleavs-kmd-
atty_rhime ----g----------riniag--lktaeaaeiagkfts-------
2dkb       ----p----------ltvsed--eidlglsllgqaieral-----
2gsaA      f-eag----------ftslah--teedidatlaaa-rtvmsal--
1ax4A      -patgeqkhadmefmrltiarrvytndhmdyiadaliglkekfa-



