
SAGA FORMAT
alignement  2myr_ref3.t_coffee_aln10 nseq=21 len=591
T_COFFEE ALIGNMENT
CPU TIME:3433360



2myr       --------dfifgvassayqiegti---grglniwdgfthrypdksgpdh
bgl2_bacsu -hpesfpkhflwgsasaayqiegawnedgkgpsvwdvftki-pgktfkg-
lacg_lacac --tktlpkdfifggataayqaegatktdgkgrvawdkflee-nfwy----
lacg_lacca --skqlpqdfvmggataayqvegatkedgkgrvlwddfldk-qgrf----
bglc_maize pqrdwfpsdftfgaatsayqiegawnedgkgesnwdhfchnhperildg-
bgls_agrsp --aarfpgdflfgvatasfqiegstkadgrkpsiwdafcnm-pghvfgr-
bgls_trirp lsrssfprgfifgagssayqfegavneggrgpsiwdtfthkypekirdg-
1gowA      --------sfrfgwsqagfqsemgtpgsedpntdwykwvhd-penmaagl
bgla_clotm mskitfpkdfiwgsataayqiegaynedgkgesiwdrfsht-pgniadg-
bgla_thema mnvkkfpegflwgvatasyqiegspladgagmsiwhtfsht-pgnvkng-
bglb_paepo -ntfifpatfmwgtstssyqieggtdeggrtpsiwdtfcqi-pgkvigg-
bgla_bacci -----fpsdfkwgvataayqiegaynedgrgmsiwdtfaht-pgkvkng-
gunb_paela --------syvea-mqpgwn-lgns-ldav--------g--ade------
1edg       ---------fvkg-lrlgwn-lgnt-fdaf--------n--gt-nitne-
gun1_butfi --------qvvsd-mrvgwn-igns-ldsf--------g--qsynfpyt-
gunb_clocl --------qvvke-mkvgwn-lgnt-mdat--------g-----------
guna_rumal --------elvge-mktgwn-lgns-ldat--------g--ap-gna---
guna_clolo --------eivqe-mgvgwn-lgnt-ldakit------n--ls-yntsp-
gund_cloce --------dmvkk-mgigmn-lgnt-fdap--------------------
gune_clotm --------dlvke-ikigwn-lgnt-ldap--------------------
gunb_rumal ----tsakdlvak-msngwn-lgnt-mdat--------g--e--gle---

2myr       gngdttcd---sfsywqkdidvldelnatgyrfsiawsriipr-------
bgl2_bacsu tngeiavd---hyhrfkedvalmaemglkayrfsvswprvfpk-------
lacg_lacac -kgdpasd---fyhnyvedlelaekfggnvirisiawsrifpn-------
lacg_lacca -kpdpaad---fyhrydedlalaekyghqvirvsiawsrifpd-------
bglc_maize snsdigan---syhmyktdvrllkemgmdayrfsiswprilpk-------
bgls_agrsp hngdiacd---hynrweedldlikemgveayrfslawpriipd-------
bgls_trirp snaditvd---qyhrykedvgimkdqnmdsyrfsiswprilpk-------
1gowA      vsgdlpengpgywgnyktfhdnaqkmglkiarlnsewsrqfpnplprpqn
bgla_clotm htgdvacd---hyhryeedikimkeigiksyrfsiswprifpe-------
bgla_thema dtgdvacd---hynrwkedieiieklgvkayrfsiswprilpe-------
bglb_paepo dcgdvacd---hfhhfkedvqlmkqlgflhyrfsvawprimpa-------
bgla_bacci dngnvacd---syhrveedvqllkdlgvkvyrfsiswprvlpq-------
gunb_paela ---tlarg---npritkeliqniaaqgyksiripvtwdshiga-a-----
1edg       ldyetsws---gikttkqmidaikqkgfntvripvswhphvsg-s-----
gun1_butfi slnetywg---npattkalidevakagfntiripvswgqyttg-s-----
gunb_clocl --getnwg---npltthamidkvkaagfntlrlpitwdghiga-a-----
guna_rumal --sevnwg---npkttkemidavynkgfdviripvtwgghvgd-a-----
guna_clolo isfetgwg---npvttkamidkiknagfktiripttwgehldg-------
gund_cloce --tegsws----kaaqeyyfddfkqagfkhvripirwdqhtla-n-----
gune_clotm --tetawg---nprttkamiekvremgfnavrvpvtwdthigp-a-----
gunb_rumal --seiswlpt-kvytnkfmidmlpeagfnvlripvswgnhlid-n-----

2myr       ---gk---rsrgvnq------------kgidyyhglidglikkgitpfvt
bgl2_bacsu ---g-----kgeine------------aglafydslidellshhiepvlt
lacg_lacac ---g-----dgevkp------------ngvdfyhklfaecdarhvepfvt
lacg_lacca ---g-----agevep------------rgvafyhklfadcaahhiepfvt
bglc_maize ---gt---kegginp------------dgikyyrnlinlllengiepyvt
bgls_agrsp ---g-----fgpine------------kgldfydrlvdgckargiktyat
bgls_trirp ---gk---lsgginh------------egikyynnlinellangiqpfvt
1gowA      fdeskqdvteveinenelkrldeyankdalnhyreifkdlksrglyfiqn
bgla_clotm ---g-----tgklnq------------kgldfykrltnlllengimpait
bgla_thema ---g-----tgrvnq------------kgldfynriidtllekgitpfvt
bglb_paepo ---------agiine------------egllfyehlldeielaglipmlt
bgla_bacci ---g-----tgevnr------------agldyyhrlvdellangiepfct
gunb_paela ---p-----nyqiea------------aylnrvqevvqwaldanlyvmin
1edg       ---------dykisd------------vwmnrvqevvnycidnkmyviln
gun1_butfi ---------dyqipd------------fvmnrvkevvdycivndmyviln
gunb_clocl ---p-----dyaida------------twmnrveeianyafdnnmyviin
guna_rumal ---p-----dykidd------------ewiarvqevvnyayddgayviin
guna_clolo ---------nnklne------------ewvkrvkevvdyciaddlyviln
gund_cloce ---s-----pytvds------------nflnrietvidwslsrgfvtvin
gune_clotm ---p-----dykide------------awlnrveevvnyvldcgmyaiin
gunb_rumal ---------nytidp------------awmdrvqeivnygiddgmyviln

2myr       lfh-------wdlpqtlqdey----e------gfldp---qiiddfkdya
bgl2_bacsu lyh-------wdlpqalmdey----g------gfesr---niiedfnhyc
lacg_lacac lhh-------fdtpeglhed-----g------dflth---ekmddfveya
lacg_lacca lhh-------fdtperlhea-----g------dwlsq---emlddfvaya
bglc_maize ifh-------wdvpqaleeky----g------gfldkshksivedytyfa
bgls_agrsp lyh-------wdlpltlmgd-----g------gwasr---stahafqrya
bgls_trirp lfh-------wdlpqvledey----g------gflns---gvindfrdyt
1gowA      myh-------wplplwlhdpirvrrgdftgpsgwlst---rtvyefarfs
bgla_clotm lyh-------wdlpqklqdk-----g------gwknr---dttdyfteys
bgla_thema iyh-------wdlpfalqlk-----g------gwanr---eiadwfaeys
bglb_paepo lyh-------wdlpqwiede-----g------gwtqr---etiqhfktya
bgla_bacci lyh-------wdlpqalqdq-----g------gwgsr---itidafaeya
gunb_paela vhhds---wlwiskmesqhd----qvlarynaiw--t---qiank-----
1edg       thhdvdkv-kgyfpssqyma----sskkyitsvw--a---qiaar-----
gun1_butfi shhdinsdycfyvpnnankd----rsekyfksiw--t---qiake-----
gunb_clocl lhhedg----wlkpyyanea----evkakitkvw--t---qianr-----
guna_rumal shheed----wripdnehid----avdektaaiw--k---qvaer-----
guna_clolo thhegn----wviptyakes----svtpklktlw--t---qisea-----
gund_cloce shhdt-----wlmdnysqn-------igrfekiw--e---qiaqr-----
gune_clotm lhhdnt----wiiptyaneq----rskeklvkvw--e---qiatr-----
gunb_rumal thhee-----wympkpsekd----gdieelkaiw--s---qiadr-----

2myr       dlcfeefgdsvkywltinqlysvptrgygsalda----pgrcsptvdpsc
bgl2_bacsu itlykrfgdrvkywvtlneqnynfnhgfitamhp----pgv----kd---
lacg_lacac dycfkefpe-vkywitineirsvavdqyiignfp----pad----tf---
lacg_lacca kfcfeefse-vkywitineptsmavqqyttgtfp----pae----sg---
bglc_maize kvcfdnfgdkvknwltfnepqtftsfsygtgvfa----pgrcspgld-ca
bgls_agrsp ktvmarlgdrldavatfnepwcavwlshlygvha----pge----rn---
bgls_trirp dlcfkefgdrvrywstlnepwvfsnsgyalgtna----pgrcsas-n-va
1gowA      aytawkfddlvdeystmnepnvvgglgy-vgvksg-fppgy----ls---
bgla_clotm evifknlgdivpiwfthnepgvvsllghflgiha----pgi----kd---
bgla_thema rvlfenfgdrvknwitlnepwvvaivghlygvha----pgm----rd---
bglb_paepo svimdrfgerinwwntinepycasilgygtgeha----pgh----en---
bgla_bacci elmfkelggkikqwitfnepwcmaflsnylgvha----pgn----kd---
gunb_paela ---fknspskl-mfesvneprftdgg------------------------
1edg       ---fanydehl-ifegmneprlvghaneww---pe-lt------------
gun1_butfi ---fknydyhl-vfetmneprlvghgeeww---fprnn------------
gunb_clocl ---fkdygdyl-ifetmneprpvgaadews--------------------
guna_rumal ---fkdygdhl-ifeglneprvkgspqewn--------------------
guna_clolo ---fkdyddhl-ifetlneprlegtpyewt--------------------
gund_cloce ---fkgksenl-vfeilneph--g--------------------------
gune_clotm ---fkdyddhl-lfetmneprevgspmewm--------------------
gunb_rumal ---fkgydehl-ifeglneprlrgegaewt--------------------

2myr       ya-gnsstepyivahhqllahakvvdlyrkny-thqggkigptmitrwfl
bgl2_bacsu ------rkrfyeanhiaflanakaiesfrey---vpegkigpsfayspay
lacg_lacac -----gfdkmfqthhnqmvgharavklfkhd---gskgeigivhalqtny
lacg_lacca -----rfdktfqaehnqmvaharivnlyksm---qlggqigivhalqtvy
bglc_maize yptgnslvepytaghnillahaeavdlynkhy-krddtriglafdvmgrv
bgls_agrsp ------meaalaamhhinlahgfgveasrhv---apkvpvglvlnahsai
bgls_trirp kp-gdsgtgpyivthnqilahaeavhvyktkyqayqkgkigitlvsnwlm
1gowA      ------felsrramyniiqaharaydgiksv---s-kkpvgiiyanssfq
bgla_clotm ------lrtslevshnlllshgkavklfrem---nidaqigialnlsyhy
bgla_thema ------iyvafravhnllraharavkvfret---vkdgkigivfnngyfe
bglb_paepo ------wreaftaahhilmchgiasnlhkek---gltgkigitlnmehvd
bgla_bacci ------lqlaidvshhllvahgravtlfrel---gisgeigiapntswav
gunb_paela -----ttde-akqqkmldelnvsffnivrns---g-----gq--na----
1edg       ----n-sdv-vdsincinqlnqdfvntvrat---g-----gk--na----
gun1_butfi ----psndi-reavacindynqvaldairat---g-----gn--na----
gunb_clocl ------ggs-yenrdmvnrynltavntirat---g-----gn--na----
guna_rumal ------ggt-eegrrcvdrlnktfldtvrat---g-----gn--ne----
guna_clolo ------ggt-sesrdvvnkynaaalesirkt---g-----gn--nl----
gund_cloce -------ni-tdsq--indmnkrilniirkt-------------np----
gune_clotm ------ggt-yenrdvinrfnlavvntiras---g-----gn--nd----
gunb_rumal ------g-t-seareiineyekafvetvras---g-----gn--ng----

2myr       pyndtdrhsiaatermkqffl-gwfmgp-ltngtypqimidtvgar----
bgl2_bacsu plssh-pedilafenaeeftn-nwwldm-ycwgtypqipfrclekqg--w
lacg_lacac pfnesnpadigaaeledlldn-kflvdg-tfvgkypqetmeavkdilaan
lacg_lacca pysdsa-vdhhaaelqdalen-rlyldg-tlageyhqetlalvkeildan
bglc_maize pygts-fldkqaeerswdinl-gwflep-vvrgdypfsmrslarer----
bgls_agrsp pasdg-eadlkaaerafqfhn-gaffdp-vfkgeypaemmealgdr----
bgls_trirp plddnsipdikaaersldfqf-glfmeq-lttgdysksmrrivknr----
1gowA      pltdk---dmeavemaend-nrwwffda-iirgeitr---------g--n
bgla_clotm pasek-aedieaaelsfslag-rwyldp-vlkgrypenalklykkkg--i
bgla_thema pasek-eediravrfmhqfnnyplflnp-iyrgdypelvlefarey----
bglb_paepo aaser-pedvaaairrdgfin-rwfaep-lfngkypedmvewygtyl--n
bgla_bacci pyrrt-kedmeaclrvngwsg-dwyldp-iyfgeypkfmldwyenlg--y
gunb_paela -------------tr--------plvls-tleasptq---erm-tal--y
1edg       -------------sr--------ylmcp-gyvaspdg-------atn--d
gun1_butfi -------------tr--------cvmvp-gydasieg-------cmt--d
gunb_clocl -------------lr--------himvp-tlaaaals-------ttm--n
guna_rumal -------------kr--------lllmt-tyasssms-------nvi--k
guna_clolo -------------sr--------avmmp-tyaasgss-------ttm--n
gund_cloce -------------tr--------nviigagywnsy---------nsl--s
gune_clotm -------------kr--------filvp-tnaatgld-------val--n
gunb_rumal -------------dr--------clmit-gyaassgy-------nnl--s

2myr       -lptfsp--e----etnlvkg---sydflglnyyftqyaqpspnpvnatn
bgl2_bacsu -aptiea--g----dmdllak--gkpdfvgvnyyqtityernpldgv-se
lacg_lacac hggefn-ied----efkaidaakdvqdfvgvdyylsewmrayd--g-kse
lacg_lacca hqpmfqstpq----emkaideaahqldfvgvnnyfskwlrayh--g-kse
bglc_maize -lpffkd--e----qkeklag---synmlglnyytsrfsknidispnysp
bgls_agrsp -mpvvea--e----dlgiisq---kldwwglnyytpmrvaddatpgvefp
bgls_trirp -lpkfsk--f----esslvng---sfdfiginyysssyisnapshgnakp
1gowA      -eki---vrd----dl---kg---rldwigvnyytrtvvkrtekgyvslg
bgla_clotm -elsfpe--d----dlklisq---pidfiafnnyssefikyd--p--sse
bgla_thema -lpenyk--d----dmseiqe---kidfvglnyysghlvkfd--p--dap
bglb_paepo gldfvqp--g----dmeliqq---pgdflginyytrsiirs---tn-das
bgla_bacci -kppivd--g----dmelihq---pidfiginyytssmnryn--pg-eag
gunb_paela n-tmtkl------ndknli---------atvhfygf--------------
1edg       y-frmpn--disgnnnkii---------vsvhaycp--------------
gun1_butfi g-fkmpn--dtas--grli---------lsvhayip--------------
gunb_clocl d-yivpn--n----dsrvi---------vslhmysp--------------
guna_rumal d-taipe--d-----dhig---------fsihaytp--------------
guna_clolo d-fkvpd-------dknvi---------asvhaysp--------------
gund_cloce q-leipn--d-----pnli---------atfhyydp--------------
gune_clotm d-lvipn--n----dsrvi---------vsihaysp--------------
gunb_rumal a-ielpe--d----sdkli---------isvhaylp--------------

2myr       -hta-mmdagakltyinasghyigp-lf-e-sdgg---dgs-sniyyyp-
bgl2_bacsu gkmn---ttgqkgtnqe-t---gipgvf-k-tkknphlttsnwdwtidp-
lacg_lacac ithngtgdkgtskvqvkgvgeeklp-d---------giettdwdwliyp-
lacg_lacca tihngdgtkgssvarlqgvgeeklp-d---------giettdwdwsiyp-
bglc_maize -vln-tddayasqevng---pdgkp-igpp-mgnp-------wi-ymyp-
bgls_agrsp atm----papa-v---s------dv----k----------tdigwevya-
bgls_trirp -sys-tnpmtn-isfek-hg---ip-lgpr-aasi-------wi-yvypy
1gowA      g----yghgcernsv-sl---aglp----t----------sdfgweffp-
bgla_clotm sgfs---pans-i---l-e---kfe----k----------tdmgwiiyp-
bgla_thema akvs------f-v---e-r---dlp----k----------tamgweivp-
bglb_paepo -l-l---qveq-v---h-m---eep----v----------tdmgweihp-
bgla_bacci gmls----sea-i---s-m---gap----k----------tdigweiya-
gunb_paela -------------------------wpf-s-vniag---ytkfda-et-q
1edg       -------------------------wnf-agl-amadggtnawnindskd
gun1_butfi -------------------------yyf-a-l--asd-tyvtrfd-dn-l
gunb_clocl -------------------------yff-s-adltsqwttatwgs-da-d
guna_rumal -------------------------yaf-t-ynanadwelfhwdd-sh-d
guna_clolo -------------------------yff-a-mdtssn-svntwgs-sy-d
gund_cloce -------------------------ysf-t-hqwqg-----twgt-kn-d
gune_clotm -------------------------yff-a-mdvn---gtsywgs-dy-d
gunb_rumal -------------------------ysf-a-ldtkg---tdky---dp-e

2myr       ---kgiysvmdyfkn-ky-y--npliyvtengistp-gs----enrkesm
bgl2_bacsu ---iglriglrrits-ry-q--lp-vfitenglge-fdkv-----edgtv
lacg_lacac ---qglydkimrvkn-dy-pn-ihkvyitengigf-kdtvpdneetdktv
lacg_lacca ---rgmydilmrihn-dy-pl-vpvtyvtengigl-keslpenatpdtvi
bglc_maize ---eglkdllmimkn-ky-g--nppiyitengigd-vdtketplpmeaal
bgls_agrsp ---palhtlvetlye-ry-d--lpecyitengacy-nmgv-----engqv
bgls_trirp mfiqedfeifcyilkini-t--ilqfsitengmnefnda--t-lpveeal
1gowA      ---eglydvltkywn-ry-h--l-ymyvtengia---dd-----------
bgla_clotm ---eglydllmlldr-dy-g--kpnivisengaaf-kdei----gsngki
bgla_thema ---egiywilkkvke-ey-n--ppevyitengaaf-ddvv----sedgrv
bglb_paepo ---esfyklltriek-df-skglp-ilitengaam-rdel-----vngqi
bgla_bacci ---eglydllrytad-ky-g--nptlyitengacy-ndgl----sldgri
gunb_paela ---ndiittfdnvyn-tfvakgip-vvvgeygllg-fdk---nt---gvi
1edg       q--sevtwfmdniyn-kytsrgip-viigecgavd-k-----nn------
gun1_butfi k--ydidsffndlns-kflsrnip-vvvgetsatn-r-----nn------
gunb_clocl k--aalsadfdavyn-kfvkngra-vvigemgtin-k-----nn------
guna_rumal ---gelvslmtnlke-nyldkdip-viiteygavn-kd----nn------
guna_clolo k--ysldveldsyln-tfkskgvp-vvigefgsin-k-----nn------
gund_cloce m--daiamvfnhvkk-wsdknnip-vylgeygvmg-h-----sd------
gune_clotm k--asltseldaiyn-rfvkngra-viigefgtid-k-----nn------
gunb_rumal d--taiptlfeslne-lfisrdip-vivgefgsmn-k-----dn------

2myr       ldytridylcshlcflnkvikekdvnvkgylawalgdnyefn---ngf-t
bgl2_bacsu qddyridylrshleqcrqaisdg-vdligycswsftdllswl---ngy-q
lacg_lacac hddaridyvkqhleviadaiadg-anvkgyfiwslmdvftwt---ngy-t
lacg_lacca edpkridyvkkylsamadaihdg-anvkgyfiwslqdqfswt---ngy-s
bglc_maize ndykrldyiqrhiatlkesidlg-snvqgyfawslldnfewf---agf-t
bgls_agrsp ndqprldyyaehlgivadlirdg-ypmrgyfawslmdnfewa---egy-r
bgls_trirp lntyridyyyrhlyyirsairag-snvkgfyawsfldcnewf---agf-t
1gowA      adyqrpyylvshvyqvhrainsg-advrgylhwsladnyewa---sgf-s
bgla_clotm edtkriqylkdyltqahraiqdg-vnlkayylwslldnfewa---ygy-n
bgla_thema hdqnridylkahigqawkaiqeg-vplkgyfvwslldnfewa---egy-s
bglb_paepo edtgrhgyieehlkachrfieeg-gqlkgyfvwsfldnfewa---wgy-s
bgla_bacci hdqrridylamhliqasraiedg-inlkgymewslmdnfewa---egy-g
gunb_paela eqgeklkffeffaqyv---kqks-ist---mlw---dng-----------
1edg       -lktrveymsyyvaqa---karg-ilc---ilw---dnnnf----sgt-g
gun1_butfi -taervkwadyywgraa--rysn-vam---vlw---dnniyqnnsagsdg
gunb_clocl -ldsrvkhaeyyakea---tvrg-itp---iww---dngycv---agk-e
guna_rumal -dedrakwvssyieya---ellggipc---vww---dngyys---sgn--
guna_clolo -tssraelaeyyvtaa---qkrg-ipc---vww---dnnyae---tnk-g
gund_cloce -rtsavkwfdfvsdqa---ishg-fsc---gaw---dngvfg--svdn-d
gune_clotm -lssrvahaehyarea---vsrg-iav---fww---dngyyn---pgd-a
gunb_rumal -iddrvkclddylgna---akyd-ipc---vww---dn-yar---ign-g

2myr       vrfglsyinwnn--v--tdrdlkksgqwyqkfis---p---
bgl2_bacsu krygfvyvnrdeestsdlkrlkkksfywyqdvi--------
lacg_lacac kryglfyvdfd---t--qdrypsktadwfknl---------
lacg_lacca kryglffvdfp---t--qnryikqsaewfk-----------
bglc_maize erygivyvdrnn--n--ctrymkesakwlkefnt-------
bgls_agrsp mrfglvhvdyq---t--qvrtvknsgkwysalas-------
bgls_trirp vrfglnfvdxkd--g--lkrypklsaqwyknflk---rn--
1gowA      mrfgllkvdyn---t--krlywrpsalvyreiatngaitde
bgla_clotm krfgivhvnfd---t--lerkikdsgywykevi--------
bgla_thema krfgivyvdys---t--qkrivkdsgywysnvv--------
bglb_paepo krfgivhinye---t--qertpkqsalwfkqmma-------
bgla_bacci mrfglvhvdyd---t--lvrtpkdsfywykgvis-------
gunb_paela qh---f--nrts-----fkwsdpdlfnmikasw-tgrs---
1edg       elfgff--drrs-----cqfkfpeiidgmvkya-fglin--
gun1_butfi echmyi--drns-----lqwkdpeiistimkhv-dg-----
gunb_clocl qtfgif--nrkn-----ltwccpevmqafirga--------
guna_rumal elfgif--drnt-----ctwftdtvtdaiiena--------
guna_clolo etfgll--nrst-----lnwyfsdikdalir----------
gund_cloce --mafy--nrdt-----rqf-dkeilnail-----------
gune_clotm etyall--nrkt-----lswyypeivqalmrga--------
gunb_rumal enfgll--nrqe-----ydwyfpklmdvfkkya--------



