
SAGA FORMAT
alignement  1cpt_ref2.t_coffee_aln10 nseq=15 len=488
T_COFFEE ALIGNMENT
CPU TIME:915780



1cpt       eviy-pafkwlrde-qplamah--iegydpmwiatkhadvmqigkqpglf
1oxa       -dw-ystyaelret-apvtpvr---flgqdawlvtgydeakaalsdlrls
cpxe_strgo --qlpdgyaqlrdtpgplhrvt--lydgrqawvvtkheaarkllgdprls
cpxh_strgr -----agyaplreg-rplsrvt--lfdgrpvwavtghalarrlladprls
cp55_fusox -----aefaklrat-npvsqvk--lfdgslawlvtkhkdvcfvatsekls
cpxf_strgo -dpap-dvteaart-epvtrat--lwdgsscwlvtrhqdvravlgdprfs
fas1_rhofa -npt-eelaqvrdr-dgvipvg--elygapaflvcryedvrrifadsnrf
bioi_bacsu -npy-sfydtlrav-hpiykgs---flkypgwyvtgyeetaailkdarfk
y08q_myctu -npw-pmyralrdh-dpvhhvvppqrpeydyyvlsrhadvwsaardhqtf
cpxg_strsq -gpp-aemqalrhk-apvtrta--fadgrpgwlvtgysaaravlsdsrft
cpxq_sacer -----dwlgtmrek-qpvwq------drygvwhvfrhadvqtvlrdtatf
cpxk_sacer -dr-hnryarmre--epvqrir--tvngldawlitryedvkqalldpria
cpxm_bacsu -fpf-piydklrre-spvrydp--l---rdcwdvfkyddvqfvlknpklf
1phd       -gv-qeawavlqesnvp--dlvwt-rcngghwiatrgqlireayedyrhf
2hpdA      -kpv-qalmkiadelgeifkfe---apgrvtrylssqrlikeacdesrfd

1cpt       snaegseilydq----nneafmrsisggcphvidsltsmdppthtayrgl
1oxa       sdpkkkypgvevefpaylgfped-vrny---fatnmgtsdppthtrlrkl
cpxe_strgo snrtd--dnfpa----tsprfea-vres---p-qafigldppehgtrrrm
cpxh_strgr tdrsh--pdfpv----paerfag-aqrr---r-vallgvddpehntqrrm
cp55_fusox kvr--trqgfpe----lsasgkq-aaka---k-ptfvdmdppehmhqrsm
cpxf_strgo adahr--tgfpf----ltaggre-iigt---n-ptflrmddpeharlrrm
fas1_rhofa snaht--pmfai--psggdviedelaam---ragnligldppdhtrlrhi
bioi_bacsu vr---t--plpe----sstkyqd-lshv---qnqmmlfqnqpdhrrlrtl
y08q_myctu ssaq----gltvny----gelem-iglh---dtppmvmqdppvhtefrkl
cpxg_strsq arge-----------------re--------h-pavpraatledercrrl
cpxq_sacer ssd-----------p--trvieg-aspt----pgmiheidppehralrkv
cpxk_sacer kdfgrtqqiiekrladaerr-pg-fspd---lgphmlntdppdhtrlrkl
cpxm_bacsu ss----------------kr--g--iq-----tesiltmdppkhtklral
1phd       ssec----pf-i--pr---ea-geaydfip------tsmdppeqrqfral
2hpdA      knlsqal---kf---v--rdfagd----glftswtheknwkkah----ni

1cpt       tlnwfqpasirkleenirriaqasvqrlld--fd---gecdfmtdca-ly
1oxa       vsqeftvrrveamrprveqitaelldevgd--sg----vvdivdrfa-hp
cpxe_strgo tiseftvkrikgmrpeveevvhgfldemla--ag---ptadlvsqfa-lp
cpxh_strgr liptfsvkrigalrpriqetvdrlldamer--qg---ppaelvsafa-lp
cp55_fusox veptftpeavknlqpyiqrtvddlleqmkq--kgcangpvdlvkefa-lp
cpxf_strgo ltadfivkkveamrpevqrladdlvdrmtt--gr---tsadlvtefa-lp
fas1_rhofa laaefsvhrlsrlqpriaeivdsaldgleq--ag---qpadlmdrya-lp
bioi_bacsu asgaftprttesyqpyiietvhhlldqvqg--k----kkmevisdfa-fp
y08q_myctu vsrgftprqvetveptvrkfvverleklra--n----gggdivtelf-kp
cpxg_strsq iagqftarrmrqltgrterivrehldameh--mg---spadlvehfa-lp
cpxq_sacer vssaftprtisdleprirdvtrsllad-----ag---esfdlvdvla-fp
cpxk_sacer vvkaftarrveglrprieqitddlldrlag--rs----evdlidefa-fp
cpxm_bacsu vsraftpkavkqletrikdvtafllqearq--k----stidiiedfa-gp
1phd       anqvvgmpvvdklenriqelacslieslrp--qg----qcnftedya-ep
2hpdA      llpsfsqqamkgyhammvdiavqlvqkwerlnad---ehievpedmtrlt

1cpt       y-------------------plhvvmtalgvpeddeplmlkl-tqdffgv
1oxa       l-------------------pikvicellgvdeaargafgrw-sseilvm
cpxe_strgo v-------------------psmvicrllgvpyadheffqda-skrlvq-
cpxh_strgr v-------------------psmvicallgvpyadhaffeer-sqrllr-
cp55_fusox v-------------------psyiiytllgvpfndleyltqq-nairtng
cpxf_strgo l-------------------pslviclllgvpyedhaffqer-srvllt-
fas1_rhofa v-------------------sllvlcellgvpyadrdelrdr-tarlld-
bioi_bacsu l-------------------asfvianiigvpeedreqlkew-aasliqt
y08q_myctu l-------------------psmvvahylgvpeedwtqfdgw-tqaivaa
cpxg_strsq v-------------------pslviaellgvpppdrehfqhd-tlrwgg-
cpxq_sacer l-------------------pvtivaellglppmdheqfgdw-sgalvdi
cpxk_sacer l-------------------pitviselmgvedsrrddfrsw-tnvlvd-
cpxm_bacsu l-------------------pviiiaemlgapiedrhlikty-sdvlvag
1phd       f-------------------pirifmllaglpeediphlkyl-tdqmtrp
2hpdA      ldtiglcgfnyrfnsfyrdqphpfitsmvraldeamnklqranpdd----

1cpt       e---aa-----rrfhe----tiatfydyfngftvdrrs--cpkddvmsll
1oxa       -dpera-----eqrgq----aarevvnfildlverrrt--epgddllsal
cpxe_strgo -s-tda-----qsalt----arndlagyldglitqfqt--epgaglvgal
cpxh_strgr -g-pga-----ddvnr----ardeleeylgalidrkra--epgdglldel
cp55_fusox --ssta-----reasa----anqelldylailveqrlv--epkddiiskl
cpxf_strgo -lrstp-----eevra----aqdelleylarlartkre--rpddaiisrl
fas1_rhofa -lsasa-----eqrav----aqredrrymatlvtraqe--qpgddllgil
bioi_bacsu idftrsr----kalte-gnimavqamayfkeliqkrkr--hpqqdmisml
y08q_myctu n---avdgatt-gald----avgsmmayftglierrrt--epaddaishl
cpxg_strsq -fgrst-----eevte----afvslggqlqrlvrlkrt--epgddllsgl
cpxq_sacer qmddptdpalaeriad----vlnpltaylkarcaerra--dpgddlisrl
cpxk_sacer -g-sqp-----eaqaq----asvamveylteliakkrt--epgddlltal
cpxm_bacsu ak-dssdkavadmvhnrrd-ghaflsdyfrdilskrra--epkedlmtml
1phd       ---dgs-----mtfae----akealydylipiieqrrq--kpgtdaisiv
2hpdA      --payd--enkrqfqe----dikvmndlvdkiiadrkasgeqsddllthm

1cpt       anskl-d--gnyiddkyinayyvaiataghdttssssggaiiglsrnpeq
1oxa       isvqd-dddgr-lsadeltsialvlllagfeasvsligigtylllthpdq
cpxe_strgo vadql-an-g-eidreelistamllliaghettasmtslsvitlldhpeq
cpxh_strgr ihrdh-pd-g-pvdreqlvafavilliaghettanmislgtftllshpeq
cp55_fusox cteqv-kp-g-nidksdavqiaflllvagnatmvnmialgvatlaqhpdq
cpxf_strgo var------g-elddtqiatmgrlllvaghettanmtalstlvllrnpdq
fas1_rhofa ar-ki-g---dnlstdelisiislimlgghettasmiglsvlallhhpeq
bioi_bacsu lkgre-kd---klteeeaastcillaiaghettvnlisnsvlcllqhpeq
y08q_myctu vaagvgad-gdtagtlsilaftftmvtggndtvtgmlggsmpllhrrpdq
cpxg_strsq iaa---dp---altdeelasiaflllvaghgttahqialgaflllehpdq
cpxq_sacer vlaev-d--gralddeeaanfstalllaghitttvllgnivrtldehpah
cpxk_sacer leave-d--gdrlsegeliamvflllvaghettvnligncvlsllgnpdq
cpxm_bacsu lqaei-d--geylteeqligfcilllvagnetttnlianavryltedsvv
1phd       angqv-n--grpitsdeakrmcglllvggldtvvnflsfsmeflakspeh
2hpdA      lngkd-petgeplddeniryqiitfliaghettsgllsfalyflvknphv

1cpt       l--alaks-----dpal----------iprlvdeavrwtapvk-sfmrta
1oxa       l--alvra-----dpsa----------lpnaveeilryiappe-tttrfa
cpxe_strgo y--aalra-----drsl----------vpgaveellrylaiadiaggrva
cpxh_strgr l--aalra-----ggts----------tavvveellrflsiae-glqrla
cp55_fusox l--aqlka-----npsl----------apqfveelcryhtasalaikrta
cpxf_strgo l--arlra-----epal----------vkgaveellryltivhngvpria
fas1_rhofa a--ammie-----dpnc----------vnsgieellrwlsvahsqpprma
bioi_bacsu l--lklre-----npdl----------igtaveeclryesptqm-tarva
y08q_myctu r--rllld-----dpeg----------ipdaveellrltspvq-glartt
cpxg_strsq l--aalra-----dpal----------tesaveellrhlsvvhhgptraa
cpxq_sacer w--daaae-----dpar----------ipaiveevlryrppfp-qmqrtt
cpxk_sacer l--aalrn-----dpsl----------lpgaieetlryespvangtfrht
cpxm_bacsu q--qqvrq-----ntdn----------vanvieetlryyspvq-aigrva
1phd       r--qelie-----rper----------ipaaceellrrfslvad--gril
2hpdA      lqkaaeeaarvlvdpvpsykqvkqlkyvgmvlnealrlwptap-afslya

1cpt       ladtevrg-qnikrgdrimlsypsanrdeevfsn------pd--efdit-
1oxa       aeeveigg-vaipqystvlvangaanrdpsqfpd------ph--rfdvt-
cpxe_strgo tadieveg-hliragegvivvnsianrdgtvyed------pd--aldih-
cpxh_strgr tedmevdg-atirkgegvvfstslinrdadvfpr------ae--tldwd-
cp55_fusox kedvmigd-klvranegiiasnqsanrdeevfen------pd--efnmn-
cpxf_strgo tedvligg-rtiaagegvlcmissanrdaevfpg------gd--dldva-
fas1_rhofa vtevqiag-vtipagsfvipsllaanrdsnltdr------pd--dldit-
bioi_bacsu sedidicg-vtirqgeqvylllgaanrdpsiftn------pd--vfdit-
y08q_myctu trdvtigd-ttipagrrvlllygsanrderqyg-------pdaaeldvt-
cpxg_strsq lqdadieg-tpvkagevvvvslgaanrdparfer------pd--avdvt-
cpxq_sacer tkatevag-vpipadvmvntwvlsanrdsdahdd------pd--rfdpsa
cpxk_sacer aeavrfgd-vvipegelvwvalgaanrdgerfed------pd--rfdit-
cpxm_bacsu tedtelgg-vfikkgssviswiasanrdedkfck------pd--cfkid-
1phd       tsdyefhg-vqlkkgdqillpqmlsglderenac------pm--hvdfs-
2hpdA      kedtvlggeyplekgdelmvlipqlhrdktiwgddveefrpe--rfenp-

1cpt       --r--fpnrhl--gfgwgahmclgqhlaklemkiffeellpklksvels-
1oxa       --r--dtrghl--sfgqgihfcmgrplaklegevalralfgrfpalslg-
cpxe_strgo --r--sarhhl--afgfgvhqclgqnlarlelevilnalmdrvptlrla-
cpxh_strgr --r--parhhl--afgfgvhqclgqnlaraeldiamrtlferlpglrla-
cp55_fusox --rkwppqdpl--gfgfgdhrciaehlakaelttvfstlyqkfpdlkva-
cpxf_strgo --r--darrhv--afgfgvhqclgqplarvelqiaietllrrlpdlrla-
fas1_rhofa --r--gvaghl--afghgvhfclghslarmtlrtavpavlrrfpdlals-
bioi_bacsu --r--spnphl--sfghghhvclgsslarleaqiaintllqrmpslnla-
y08q_myctu --r--cprnil--tfshgahhclgaaaarmqcrvaltellarcpdfeva-
cpxg_strsq --r--edtghl--afghgmhqclgrqlarielrvaltallerfphlrla-
cpxq_sacer qvr--paprts--sfghgvhfclaaplarlenrvaleeiiarfgrltvd-
cpxk_sacer --r--ettghv--afghgihfcvgaalarleaqiavgrllerfpdlrma-
cpxm_bacsu --r--psyphl--sfgfgihfclgaplarleanialssllsmsacieka-
1phd       --r--qkvsht--tfghgshlclgqhlarreiivtlkewltripdfsia-
2hpdA      --s--aipqhafkpfgngqracigqqfalheatlvlgmmlkhfdfedhtn

1cpt       --gpp----rlva-tnfvggp--knvpirftka-----
1oxa       --ida-ddvvwrr-slllrgi--dhlpvrldg------
cpxe_strgo --vpv-eqlvlrp-gttiqgv--nelpv----------
cpxh_strgr --vpa-heirhkp-gdtiqgl--ldlpv----------
cp55_fusox --vpl-gkinytp-lnrdvgi--vdlpv----------
cpxf_strgo --vph-eeipfrg-dmaiygv--hslpi----------
fas1_rhofa ---ps-hdvrlrs-asivlgl--eelql----------
bioi_bacsu --d---fewryrp-lfgfral--eelpvtfe-------
y08q_myctu ----e-srivwsg-gsyvrrp--lsvpfrv--------
cpxg_strsq --cpa-aeiplrh-dmqvyga--drlpv----------
cpxq_sacer ----r-dderlrhfeqivlgt--rhlpv----------
cpxk_sacer --asp-ddlrwrf-svlmrgl--eklpvr---------
cpxm_bacsu --ahd-ekleaip-spfvfgv--krlpvri--------
1phd       ---pg-aqiqh--ksgivsgv--qalplvwdpattkav
2hpdA      yeldiketltlkp-egfvvkakskkiplgg--------



