
SAGA FORMAT
alignement  1pamA_ref1.t_coffee_aln10 nseq=5 len=704
T_COFFEE ALIGNMENT
CPU TIME:57160



1pamA ---tdviyqiftdrfsdgnpannptgaafdgsctnlrlycggdwqg-iin
1smd  --grtsivhlfew---r--------------------------wvdi-al
1jdc  --gdeiilqgfhwnvvr---e-ap--n---------------dwynilrq
1bf2  dviyevhvrgfteqdt----s-ip--aqyrg--tyygag-----------
1vjs  --lngtlmqyfewymp------n------------d----gqhwkr-lqn

1pamA kindgyltgmgitaiwisqpveniysvinysg-----vnntay---hgy-
1smd  -ecerylapkgfggvqvspp-nenvaihn--p-----f-rpww---ery-
1jdc  --qaatiaadgfsaiwmpvpwrdfsswsd--g-----sksggg---egy-
1bf2  -lkasylaslgvtavefl-pvqetqndandvvpnsdanqnywgymtenyf
1vjs  --dsaylaehgitavwip-paykgtsqadv-g-------ygay---dly-

1pamA wa-rdfkkt--n-paygtmqdfknlidtahahnikviidfapnhtspa--
1smd  qp-vsyklc--t--rsgnedefrnmvtrcnnvgvriyvdavinhmcgn--
1jdc  fw-hdfnkn----grygsdaqlrqaasalggagvkvlydvvpnhmnrg--
1bf2  spdrryayn--k-aaggptaefqamvqafhnagikvymdvvynhtaeggt
1vjs  dl-gefhqkgtvrtkygtkgelqsaikslhsrdinvygdvvinhkgga--

1pamA -ssddpsf-----------------aengrlydngnllg--gyt------
1smd  -avsagtsstcgsyfnpgsrdfpavpysgwdfndgkckt--g-s------
1jdc  -ypdkein-----------------lpagqgfwrndcadpgnyp------
1bf2  wtssdpttatiy---s------------wrgldnatyy--e-lt------
1vjs  dated-vtavev---------dp--adrnrvisgehlik--awthfhfpg

1pamA -ndtqnlf--h--hyggtdf--stiengiyk---nly---dladlnhnns
1smd  -gdien------------------yndatqv---rdcrlsglldlalgkd
1jdc  -ndcddgd--r--fig------------------------gdadlntghp
1bf2  -sgnqyfy--d--ntg------------------------iganfntynt
1vjs  rgstysdfkwhwyhfdgtdwdesrklnriykfqgkaydylmyadidydhp

1pamA svdvylkdai-kmwldlgvdgirvdavkhmpfgwqks-fmatin------
1smd  yvrskiaeym-nhlidigvagfridaskhmwpgdika-ildklh------
1jdc  qvygmfrdeftnlrsqygaggfrfdfvrgyapervnswmtdsad------
1bf2  vaqnlivdslaywantmgvdgfrfdlasvlgnsclngaytasapncpngg
1vjs  dvaaeikrwgtwyanelqldgfrldavkhikfsflrd-wvnhv-------

1pamA -------n------------ykpvftfg--ew------flgvn--eispe
1smd  -------n-lns----------nwfpeg--skpfi---yqevi--dlgge
1jdc  -------nsfcv--------gqlwkgps--eyp-n---wdwrn--tasw-
1bf2  ynfdaadsnvainrilreftvrpaaggsgldlf-aepwaiggnsyqlggf
1vjs  ---------rek-------tgkemftva--ey------wqn----dlga-

1pamA yhqfanesgms-lldfrfaqkarqvfrd-------ntdnmyglkamlegs
1smd  pikssdyfgngrvtefkygaklgtvirk------wngekmsylknwgeg-
1jdc  qqiikdwsdrakcpvfdfalkermqngs-------ia----dwkhglngn
1bf2  pqgwsewngl----frdslrqaqnelgsmtiyvtqdandfsgssnlfq--
1vjs  lenylnktnfnh-svfdvplhyqfhaas-------tqgggydmrkllnst

1pamA evdyaqvndqvtfidnhd--m-----------------------------
1smd  -wgfmpsdralvfvdnhd--n-----------------------------
1jdc  pdprwre-vavtfvdnhd--t-----------------------------
1bf2  ssgrspw-nsinfidvhdgmtlkdvyscngannsqawpygpsdggtstny
1vjs  vvskhpl-kavtfvdnhd--t-----------------------------

1pamA --erfhts-ngd-------rr---kleqalaftltsr-gvpaiy--ygse
1smd  --qrghga-gg---asiltfwdarlykmavgfmlahpygftrvmssyrwp
1jdc  --gyspgq-nggqhhwalqdg---lirqayayiltsp-gtpvvy--wd-h
1bf2  swdqgmsagtgaa---vdqrr---aartgmafemlsa-gtplmq--ggde
1vjs  --qpgqsl------estvqtw---fkplayafiltresgypqvf--yg-d

1pamA qyms---gg---nd---p----dn--rarlpsfs-tt--tt---ayqviq
1smd  ryfe---ngkdvndwvgppn--dngvtke-vtin-pd--ttcgndwvceh
1jdc  mydw---gy---g---------df--irql--------------------
1bf2  ylrtlqcnn---na---y--nlds-s-anwltyswttdqsn---fytfaq
1vjs  mygt---kg-------------ds--qreipalk---------------h

1pamA klaplrksnpaia-----ygstherwinndviiyerkfg-nn-vavvain
1smd  rwrqirnmv-nfrnvv--dgqpftnwydngsn--qvafgrgnrgfivfnn
1jdc  --iqvrraa-gvr-ad--saisfhsgy--sglvatvs-g-sqqtlvvaln
1bf2  rliafrkahpalr-psswysgsqltwyqpsgavadsnyw-nn-tsnyaia
1vjs  kiepilkark---qya--ygaqhdyfdhhdivgwtre-gdss----van-

1pamA rnmntpasitglvtslprgsyndvlgg-ilngntltvgaggaasnft--l
1smd  ddwtf--slt-lqtglpagtycdvisgdkingn-----------------
1jdc  sdlg----------------------------npgqvasgsfseavn--a
1bf2  yaingps-lg--------------------dsnsiyvayngwsssvtftl
1vjs  ------sgla-----------------a-----litdgpggakrmyv--g

1pamA -apggtavwqyttd----------------------attp--iign----
1smd  ------ctgikiyvsddgk--ahfsis-n---saedpfia--ihaeskl-
1jdc  -sngqvrvwrsgtgsgggepgalvsvs-----frcdngat--qmgdsvy-
1bf2  pappsgtqwyrvtdtcdwndgastfvapgsetliggagttygqcgqslll
1vjs  -rqnagetwhditgnrs-ep-vvinse-----gwgefhvn--ggsvsiy-

1pamA ----
1smd  ----
1jdc  ----
1bf2  lisk
1vjs  --vq



