
SAGA FORMAT
alignement  S51_ref5.t_coffee_aln10 nseq=15 len=373
T_COFFEE ALIGNMENT
CPU TIME:643140



RRXA_HUMAN -sanedmpverileaelave----pkt------------e--tyveanm-
USP_DROME  nsvsrdfsieriieaeqrae----tqc-gdr--a---ltf--lrvgpyst
7UP1_DROME ---ghsy-lssyislllrae----pyp------------t--sryg--q-
ESTR_CHICK ----lsltaeqmvsalleae----ppi--vy--s---eydp---------
ERR2_HUMAN ----akkpltkivsyllvae----pd--kly--a---mp------p----
HNF4_RAT   -y-edss-lps-inallqae----vls------------q--qitspisg
VDR_HUMAN  lseeqqriiailldahhktydptysdfcqfrppvrvndgggshpsrpnsr
NGFI_RAT   pdasptnlltslirahldsg----pntak---------------------
THA1_HUMAN ptpeewdlihiateahrstn----aq---------g-----shwkq----
E75A_DROME elddqprllaavlrahlet-----------ce--ftk-----ekvsamrq
ROR1_HUMAN smaelehlaqniskshlet-----------cq--ylr-----eelqqitw
RRA1_HUMAN ltpevgeliekvrkahqetf---------------p------alcq----
PPAR_HUMAN etadlkslakriyeaylknfnmnk-----vkarvilsgka--snnppfvi
PRGR_CHICK e---ip-fvppmisvlrgie----pev--vy--a---gydn---------
TLL_DROME  dlsvprvphhpvhqghhgffs---pt--aay--m---nalat--------

RRXA_HUMAN -------------------------------glnp-------------ss
USP_DROME  --------------------------------vqp-------------d-
7UP1_DROME -------------------------------cmqp-------------n-
ESTR_CHICK -------------------------------n-rp-------------fn
ERR2_HUMAN -------------------------------ddvp-------------eg
HNF4_RAT   -----------------in------------gdir-------------ak
VDR_HUMAN  htpsfsgdsssscsdhcitssdmmdsssfsnldlseedsd-dpsvtlels
NGFI_RAT   ld-y-s-----------kf----------qelvlp-------rfgke---
THA1_HUMAN rr-kflpd-------------digqspivs---mp-------dgdkvd--
E75A_DROME ra--rdc-----------------psys-----mptllac-plnpape--
ROR1_HUMAN ----q---------------------tf-----lqeeien-yqnkqre--
RRA1_HUMAN lg-kyttn-------------nsse-qrvs---l--------d-------
PPAR_HUMAN ----hdme--tlc---------maektl-----vaklvangiqnkeve--
PRGR_CHICK --------------------------------tkp-------------et
TLL_DROME  ------------------------------ral-p---------p---tp

RRXA_HUMAN pndpvtnicqaadkqlftlvewakriphfselplddqvillragwnelli
USP_DROME  --gavsalcqvvnkqlfqmveyarmmphfaqvplddqvillkaawielli
7UP1_DROME nimgidnicelaarllfsavewaknipffpelqvtdqvallrlvwselfv
ESTR_CHICK easmmtlltnladrelvhminwakrvpgfvdltlhdqvhllecawleilm
ERR2_HUMAN dikalttlcdladrelvfliswakhipgfsnltlgdqmsllqsawmeili
HNF4_RAT   riasitdvcesmkeqllvlvewakyipafcelllddqvallrahagehll
VDR_HUMAN  qlsmlphladlvsysiqkvigfakmipgfrdltsedqivllkssaievim
NGFI_RAT   dagdvqqfydllsgsldvirkwaekipgfielspgdqdlllesaflelfi
THA1_HUMAN -leafseftkiitpaitrvvdfakklpmfselpcedqiillkgccmeims
E75A_DROME -lqseqefsqrfahvirgvidfagmipgfqlltqddkftllkaglfdalf
ROR1_HUMAN -v-mwqlcaikiteaiqyvvefakridgfmelcqndqivllkagslevvf
RRA1_HUMAN -idlwdkfselstkciiktvefakqlpgfttltiadqitllkaacldili
PPAR_HUMAN -vrifhccqctsvetvteltefakaipafanldlndqvtllkygvyeaif
PRGR_CHICK psslltslnhlcerqllcvvkwskllpgfrnlhiddqitliqyswmslmv
TLL_DROME  plmaaehiketaaehlfknvnwiksvraftelpmpdqlllleeswkeffi

RRXA_HUMAN asfshrsia-vkdg--------------------------illa-tglhv
USP_DROME  anvawcsivslddggagggggglghdgsferrspglqpqqlflnq-sfsy
7UP1_DROME lnasqcsmp-lhva--------------------------pllaaaglha
ESTR_CHICK iglvwrsme-hpgk--------------------------llfa-pnlll
ERR2_HUMAN lgivyrslp-yddk--------------------------laya-edyim
HNF4_RAT   lgatkrsmv-fkdv--------------------------lllg-ndyiv
VDR_HUMAN  lrsnesftm-ddms--------------------------wtcg-nqdyk
NGFI_RAT   lrlayrskp-gegk--------------------------lifc-sglvl
THA1_HUMAN lraavrydp-esdt--------------------------ltls-gemav
E75A_DROME vrlicmfds-sins--------------------------iicl-ngqvm
ROR1_HUMAN irmcrafds-qnnt--------------------------vyfd-gkyas
RRA1_HUMAN lrictrytp-eqdt--------------------------mtfs-dgltl
PPAR_HUMAN amlssvmnk-dgml--------------------------vayg-ngfit
PRGR_CHICK famgwrsykhvsgq-------------------------mlyfa-pdlil
TLL_DROME  lamaqylmp-mnfa--------------------------aqllf-vyes

RRXA_HUMAN hrn-sahs-a-gvgaifdrvltelvskmrdmqmdktelgclraivlfn--
USP_DROME  hrn-saik-a-gvsaifdrilselsvkmkrlnldrrelsclkaiilyn--
7UP1_DROME spmaadrv-v-afmdh-irifqeqveklkalhvdsaeysclkaivlft--
ESTR_CHICK drnq-gkc-vegmvei-fdmllataarfrmmnlqgeefvclksiillns-
ERR2_HUMAN deeh-srl-v-gllel-yrailqlvrrykklkvekeefvmlkalalan--
HNF4_RAT   prhc-pel-a-emsrvsirildelvlpfqelqiddneyaclkaiiffd--
VDR_HUMAN  yrvs-dvtkaghslel-ieplikfqvglkklnlheeehvllmaicivs--
NGFI_RAT   hrlq-ca--r-gfgdw-idnilafsrslhslgvdvpafaclsalvlit--
THA1_HUMAN kreq-lkn-g-glgvv-sdaifelgkslsafnlddtevallqavllms--
E75A_DROME rrda-iqnga-narfl-vdstfnfaermnsmnltdaeiglfcaivlit--
ROR1_HUMAN -pdv-fksl--gcedf-isfvfefgkslcsmhltedeialfsafvlms--
RRA1_HUMAN nrtq-mhn-a-gfgpl-tdlvfafanqllplemddaetgllsaiclic--
PPAR_HUMAN -ref-lkslrkpfcdi-mepkfdfamkfnalelddsdislfvaaiicc--
PRGR_CHICK neqr-mke-s-sfysl-clsmwqlpqefvrlqvsqeeflcmkallllnt-
TLL_DROME  e-nanrei-m-gmvtrevhafqevlnqlchlnidsteyeclraislfrks

RRXA_HUMAN ---------------------------pdskglsnpaevealrekvyasl
USP_DROME  ---------------------------pdirgiksraeiemcrekvyacl
7UP1_DROME ---------------------------tdacglsdvthieslqeksqcal
ESTR_CHICK -------------------gvytfl-sstlksleerdyihrvldkitdtl
ERR2_HUMAN ---------------------------sdsmyienleavqklqdllheal
HNF4_RAT   ---------------------------pdakglsdpgkikrlrsqvqvsl
VDR_HUMAN  ---------------------------pdrpgvqdaalieaiqdrlsntl
NGFI_RAT   ----------------------------drhglqdprrveelqnriascl
THA1_HUMAN ---------------------------tdrsgllcvdkieksqeayllaf
E75A_DROME ---------------------------pdrpglrnleliekmysrlkgcl
ROR1_HUMAN ---------------------------adrswlqekvkieklqqkiqlal
RRA1_HUMAN ---------------------------gdrqdleqpdrvdmlqeplleal
PPAR_HUMAN ---------------------------gdrpgllnvghiekmqegivhvl
PRGR_CHICK ---------------------------ipleglrsqsqfdemrtsyirel
TLL_DROME  ppsasstedlanssiltgsgspnssasaesrgllesgkvaamhndarsal

RRXA_HUMAN eayckhkype---qpgrf---aklllrlpalrs-iglkclehlfffklig
USP_DROME  dehcrlehpg---ddgrf---aqlllrlpalrs-islkcqdhlflfrits
7UP1_DROME eeycrtqypn---qptrf---gklllrlpslrt-vssqvieqlffvrlvg
ESTR_CHICK ihlmaksglslqqqhrrl---aqlllilshirh-msnkgmehlynmkckn
ERR2_HUMAN qdyelsqrhe---eprra---gkllltlpllrq-taakavqhfysvklqg
HNF4_RAT   edyindrqyd---srgrf---gelllllptlqs-itwqmieqiqfiklfg
VDR_HUMAN  qtyircrhpp-pgshlly---akmiqkladlrs-lneehskqyrcls-fq
NGFI_RAT   kehmaavagd-pqpascl---srllgklpelrt-lctqglqrifclkled
THA1_HUMAN ehyvnhrkhn---iphfw---pkllmkvtdlrm-igachasrflhmkvec
E75A_DROME qyivaqnrpd---qpefl---aklletmpdlrt-lstlhteklvvfrteh
ROR1_HUMAN qhvlqknhre----dgil---tklickvstlra-lcgrhteklmafkaiy
RRA1_HUMAN kvyvrkrrps---rphmf---pkmlmkitdlrs-isakgaervitlkmei
PPAR_HUMAN rlhlqsnhpd---diflf---pkllqkmadlrq-lvtehaqlvqiikkte
PRGR_CHICK vkaiglrqkgvvansqrfyqltklmdsmhdlvkqlhlfcln-tflqsral
TLL_DROME  hnyiqrthps---qpmrf---qtllgvvqlmhk-vssftieelffrktig

RRXA_HUMAN ----dtpi-dtflmemle----a
USP_DROME  ----drpl-eelfleqle----a
7UP1_DROME ----ktpi-etlirdmll----s
ESTR_CHICK ----vvpl-ydlllemld----a
ERR2_HUMAN ----kvpm-hklflemle----a
HNF4_RAT   ----maki-dnllqemll----g
VDR_HUMAN  pec-smkl-tplvlevfg----n
NGFI_RAT   ----lvpp-ppivdkifm----d
THA1_HUMAN p----telfpplflevfe----d
E75A_DROME kell-----rqqmwsmedgnnsd
ROR1_HUMAN pdivrlhf-pplykelft----s
RRA1_HUMAN p----gsm-ppliqemle----n
PPAR_HUMAN sda---al-hpllqeiyr----d
PRGR_CHICK ----svef-pemmsevia----a
TLL_DROME  ----diti-vrlisdmys----q



